Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq447 149 9e-31 seq2316 138 2e-27 seq2427 125 1e-23 seq2950 96.9 5e-15 >seq447 Length=7652121 Score = 149 bits (164), Expect = 9e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATG 70252 |||||| | |||||| |||| ||||||| ||||||| || ||||| | |||||| Sbjct 7113977 AATCCAGCCGATAGGCGGATGATAATGTGTGCATGGAACCCATCAGATCTCAGTCAAATG 7113918 Query 70253 GCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGC 70312 || ||||| || || || ||||||| ||||| | | |||||||| ||| ||| Sbjct 7113917 GCGCTACCTCCTTGCCATTGTTTGGTCCAGTTCCATGTTGAGGATGGCAAGTTGAACTGC 7113858 Query 70313 TTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTAT 70372 |||||||||||||||||||| || ||||| | ||||| || ||||| ||||| || || Sbjct 7113857 TTAATGTATCAGAGGAGTGCAGATATGGGATTGGGTGTGCCATTTAATATTGCCAGTTAC 7113798 Query 70373 TCTATGTTGACGCACATGATTGCTCACATTACCGG 70407 || | ||||| ||||||||||| || |||| || Sbjct 7113797 TCATTTTTGACACACATGATTGCACATGTTACAGG 7113763 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 70421 GAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAG 70480 ||||| || ||||| | || || |||| | ||||||||||| || || |||||||| Sbjct 7113088 GAGTTTGTGCACACGACAGGTGATACTCATATTTATTTAAATCATATTGAACCATTAAAA 7113029 Query 70481 GTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAA 70540 ||| | || | | || | ||| ||||| | || || |||||||| ||| ||||| Sbjct 7113028 AAACAATTAGAGAGAAAACCAAAACCCTTTCCAACACTTGAATTTGCTCGGAAAATTGAA 7112969 Query 70541 AATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAG 70600 ||||| ||| || || ||||||||||| || ||| |||| | || | ||||| Sbjct 7112968 TCCATTGATGATTTCAAATATGAAGATTTTATTATTAAAAATTACAACCCTCATCCTAAA 7112909 Query 70601 ATTCCCATGGTTCTGGCTGTTTAGAGAG-ATATATATG 70637 ||| |||| ||||||| || | || || ||||| Sbjct 7112908 ATTGAAATGGAAATGGCTGTATAAAAAGTTTAAATATG 7112871 >seq2316 Length=6356476 Score = 138 bits (152), Expect = 2e-27 Identities = 333/502 (66%), Gaps = 4/502 (1%) Strand=Plus/Minus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGG 96879 ||| ||| || || |||||| | || |||||||| | || | || ||| || | Sbjct 2966652 CCAATGGTCTTGTACCAATGTTGCGAGTGTACAATAATACAGCAAGGTATGTTGACCAAG 2966593 Query 96880 GCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTT 96939 | ||||| ||||| ||||| || | || | ||||| ||||| |||||| | || || | Sbjct 2966592 GAGGCAACAAACGACCAGGTGCATTTGCTATTTACTTAGAACCCTGGCACTCTGATGTGT 2966533 Query 96940 TTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGT 96999 |||| ||| | || || || || ||||| ||||| | ||||||| || | | Sbjct 2966532 TTGAGTTTTTAGATCTGAAAAAGAATACTGGCAAAGAAGAAGTCAGAGCCAGAGAACTAT 2966473 Query 97000 TTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGA 97059 |||||||| | ||| | ||||||||||| |||||||| || | | | || |||| Sbjct 2966472 TTTATGCATTATGGATCCCAGATTTGTTTATGAAGCGTGTTGAAAAAGATGAAATGTGGA 2966413 Query 97060 GCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGG 97119 | |||||||||| | | |||||||| |||| || ||||| ||||| ||||| | Sbjct 2966412 GTTTAATGTGCCCTCATGATTGCCCCGGTCTTGCCGACTGTTGGGGAGAAGAATTTGAAG 2966353 Query 97120 CCAAGTACACGGCC--TACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGA 97177 | | || | || | || || | || ||| || | | |||| || | ||| Sbjct 2966352 C--ATTATATGGGCAATATGAAGAGGAAAAGAGATTTGTTAAGCAAGTCCGAGCTCAAGA 2966295 Query 97178 ACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAA 97237 ||||||||| || ||| | || || || || || || || || || || | || || Sbjct 2966294 ACTGTGGAAAGCAATCATAGAAGCACAAGTGGAAACAGGCACACCATATATGTTATATAA 2966235 Query 97238 GGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCT 97297 ||| | || | || ||||| ||| | | |||||||| || || ||| | Sbjct 2966234 AGATTCTTGTAACAGAAAAAGCAATCAAAAAAATCTTGGCACCATTAAATGCAGTAATTT 2966175 Query 97298 GTGCACGGAAATTGTAGAGTAC 97319 |||||| |||||||| || ||| Sbjct 2966174 GTGCACAGAAATTGTTGAATAC 2966153 Score = 120 bits (132), Expect = 5e-22 Identities = 308/464 (66%), Gaps = 4/464 (1%) Strand=Plus/Minus Query 97800 GCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCG 97859 || || ||||| || || | || ||||| | || || || |||||| |||||||| Sbjct 2965660 GCTCCAATGCCTACAGCGTCTACAGCCCAAATCTTGGGAAACAATGAATCCTTTGAACCA 2965601 Query 97860 TTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACGTG 97919 || || |||||||| ||||| ||||| |||||| || || || | ||| Sbjct 2965600 TTTACATCAAACATTTACCAAAGACGTGTTTTGTCTGGGGAATTCCAGGTTGTTAACCAT 2965541 Query 97920 CACTTGGTTCGAGACTTGGAACGGCTCAATCTGTGGAACGATGACATGGCCCAGTTGATC 97979 || ||| | ||||||||| | | || | ||| |||| |||||| | |||| Sbjct 2965540 CATTTGTTGCGAGACTTGACGCAGGCAGATTTATGGGACGACGACATGAAAAATCTGATA 2965481 Query 97980 ATGTACAACAATGGGTCCATTCAAAACAT-TACCATCATCCCGGAAGAGTTGCGCAGAA- 98037 || |||||||||| ||||||||||| || | | | || || | || | | |||| Sbjct 2965480 ATTCACAACAATGGTTCCATTCAAAATATCGAGCGT-ATACCAAAGGACATTAG-AGAAT 2965423 Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAG 98097 | || || || || ||||||||| | || || || | |||||||| || ||| Sbjct 2965422 TGTATAAAACAGTTTGGGAGATTTCTGTTAAAACTACAATTAAAATGGCTGCTGATCGAG 2965363 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 ||| | || ||||| |||||||| || || | | || || || || | || | Sbjct 2965362 GTGCATTTATAGACCAAAGTCAATCTTTTAACATTCATGTGGCTGAACCGAATTATGGAA 2965303 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 |||| || || ||||||||||||||||| | ||| | || || || ||||| ||| Sbjct 2965302 AATTGACATCAATTCACTTTTACGCATGGAAAATGGGTTTGAAAACAGGAATGTATTATT 2965243 Query 98218 TGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 | | | |||| | || | ||||| || | || ||||| ||| Sbjct 2965242 TACGTATAAAGCCTGCTGCTAATGCTATTCAGTTCACGGTTGAC 2965199 >seq2427 Length=9881032 Score = 125 bits (138), Expect = 1e-23 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 126746 TACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGT 126805 |||| |||| || || ||||| ||||||| |||||||||||||| || ||||| |||| Sbjct 2052406 TACCAAGTCGTATTCCACTTGGGTTGAGAGCACTCTTGTCTCCGGGCACGGTGTTCTTGT 2052465 Query 126806 TGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACAC 126865 |||| ||||| ||||| || |||||||||||||| || | || || || ||| | | Sbjct 2052466 TGCAGGCGATGCTGCAGAGCTCGAGGATGCGCTCAGCGCGCGCGCCGCTCAGCCCCGCGC 2052525 Query 126866 TGCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCCAGTGGTGACGGTGTAGCCTC 126925 |||| ||||| || | ||| ||||| || || || || |||| || | || |||| Sbjct 2052526 GCCGCATGTCCACCAGCACCAGGTGCACGTCTGTGCCTCCGGTGGCGATGTCATAACCTC 2052585 Query 126926 GTGA 126929 |||| Sbjct 2052586 GTGA 2052589 >seq2950 Length=659351 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194 ||||| || || |||||||| | ||||| | ||||| ||||| | || ||||| ||| Sbjct 390446 TGGCCAGTGGAATATATAATTTTTACGGCTGCGTTTCCAAGTGCCTTGACAGGAGCGGAT 390505 Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254 ||| | ||||| || | | | ||||||||||| | ||||| || | || ||||| | Sbjct 390506 TTGTCGATATTTGCTGGGAGTTTTGCCTACATATCTGATGTATCTTCATTGAAGAATAGA 390565 Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCA 50302 ||| || |||| || ||||| ||| || || || || || |||||| Sbjct 390566 ACGTTAAGAGTTGGTATCTTAGATATTGTTTATCTAAGTACAATGCCA 390613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741023314208240