Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2316 118 8e-22 seq593 95.1 9e-15 >seq2316 Length=6356476 Score = 118 bits (130), Expect = 8e-22 Identities = 171/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| || || || || || ||||| || || || || || |||||||| ||| Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGG-- 2659514 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | |||||||| |||||||| ||| | ||||| | ||| || || | Sbjct 2659513 ACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGG 2659454 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| || |||||||| |||||| ||| |||||| |||| || || || ||| Sbjct 2659453 GAATGCCCTCTTTGTCTTGAATTTTCGCT-TTTACATTTTCAATAGTGTCAGAGGCTTCA 2659395 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15370 || ||||| || ||||||||||| || || |||||||| || || ||||| ||||| Sbjct 2659394 ACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTTGAA 2659338 >seq593 Length=2014934 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | | || || ||||| || || || ||||| |||||||| || Sbjct 754917 CCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAA 754976 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || |||| ||||||||||| | ||||| | || ||||| || Sbjct 754977 AGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 755036 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || || ||| || ||| | || |||||||| | ||| || Sbjct 755037 ATACCTTCTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACC 755096 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| || ||||||| ||| || || ||||||||||| Sbjct 755097 TCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCAT 755143 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 ||||| ||||| || || ||||| || ||||||||||| | | ||| || | |||| Sbjct 755391 ACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATC--TGACAATGTGCGTCCATCTT 755448 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | | ||||||||||| | ||||| | || ||||| ||||| ||||||||||| Sbjct 755449 CAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTT 755508 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||||| ||| ||| |||| || || || || || ||||| || || || | Sbjct 755509 GGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCAACCTCTAATGTGATAGTCT 755568 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||||| || || || || || |||||| Sbjct 755569 TGCCTGTCAAGGTCTTAACGAAGATCTGCATA 755600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362162099935434