Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3650 233 2e-56 seq593 105 6e-18 seq3450 100 2e-16 seq2316 93.3 4e-14 >seq3650 Length=1334389 Score = 233 bits (258), Expect = 2e-56 Identities = 642/970 (66%), Gaps = 29/970 (3%) Strand=Plus/Plus Query 100327 ATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA 100386 ||| || || || ||||||| |||||| || | || || || | || |||| ||||| Sbjct 960557 ATAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGTGAA 960616 Query 100387 ---ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAAC 100443 || |||||| ||| || || || ||||| ||||| |||||||| || || Sbjct 960617 TGGATTGTTGTCTTCGTAATTATGA---ACACCAGTCCAGCCGCGTCCGTACATAGCTAC 960673 Query 100444 GCCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAA---TTTCACGGCGTG 100500 |||||| | ||| || |||| |||||| || | ||||| |||||| | Sbjct 960674 GCCCACCACAATCTTCTTAGGGTTCACGCCTTGA---GCAAGCAAATATTTCACACCAAA 960730 Query 100501 ATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCC 100560 || ||| | || || || ||||||||| || ||||| || | || || | || Sbjct 960731 GTCAGTGGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGATGACC 960790 Query 100561 CAAATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCATAAGAAATATTTTATCGAG 100620 | | ||| |||||||||||||||||||| || |||||||| || || | || | Sbjct 960791 GAGGGTGTCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCAT 960850 Query 100621 AAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTGC 100680 | |||||| || | ||| | || || || || || | || | |||||| || Sbjct 960851 ATACTTTTGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGC 960910 Query 100681 GCTTGTCAACTCGTACGTTTTGCCCGTTTG--CAGTTGTAGCTGGTCCAGCATCGCGCGC 100738 | |||| |||||| | || || || | ||| || | || || ||| | ||| Sbjct 960911 GGAGGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAA--AGGTCGTTCAACATTTCACGC 960968 Query 100739 AATTCCTTCAGTAA---AATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTC 100795 |||||||||| ||| || || || | || |||| | | | | || || ||| Sbjct 960969 AATTCCTTCATTAATTCAACGTAA-ACATCTC--CGTCT---TTCGGGCTACCGAG-GTC 961021 Query 100796 GGG-TTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTT 100854 ||| || || || || || || || || ||||| || ||||| || || || || ||||| Sbjct 961022 GGGGTTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTT 961081 Query 100855 CCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTT-TCCGCATCGT 100913 ||| | | || || || || || || || || || | | || ||| ||| Sbjct 961082 CCAGGTCAAGAGGAAATCTTTTACAGAATCAACGAAG-CGATCTCTCTTCTCCTTGTCGG 961140 Query 100914 GCATGAAATAGAACGGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGT 100973 | ||| |||| || |||| | ||||| || |||||||| || || || || || | Sbjct 961141 TGAAGAAGAAGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTT 961200 Query 100974 GCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCC 101033 || |||| | ||| | ||| ||||| || || ||||| ||||| || ||||||| Sbjct 961201 CAGGCCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCC 961260 Query 101034 ATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTT 101093 | | |||| ||||| || ||||| || | |||||||| ||||||||||| | |||| Sbjct 961261 AGGAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTT 961320 Query 101094 TGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTT 101153 |||||||| || || |||| || | ||| || |||| |||||||| || || Sbjct 961321 TGAAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCTT 961380 Query 101154 TGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCG 101213 | | | |||||||| ||| || || |||||||| || ||||| ||||| | | ||| | Sbjct 961381 TTAAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAG 961440 Query 101214 AGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCGGCCGTACACGCCCCACTCTA 101273 || || || | || || || || || || || | |||||| ||||| |||| Sbjct 961441 TCAGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTA 961500 Query 101274 CAAAATACGC 101283 | || || || Sbjct 961501 CGAAGTATGC 961510 >seq593 Length=2014934 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || | | |||| ||| | ||| || ||||||||||||||||| || | Sbjct 755145 CCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAA 755204 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | || || ||||| ||||||||| | ||||| | |||||||| ||| Sbjct 755205 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 755264 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| ||||||| |||||| | | | || || |||||| Sbjct 755265 ATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACC 755324 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || || || || ||||||| ||||| |||||||| |||||| Sbjct 755325 TCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCATT 755372 >seq3450 Length=502752 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 || |||||| ||||||||||| || ||| | | |||| ||| |||||||| | || | Sbjct 192357 GATGTTGCCGAGATCGCCGACATGGCGCACGGTGGCGGTGGGCGCGCCGTGCTCCTGCTT 192416 Query 21198 CGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTG 21257 | ||||| ||||| |||||||||||||||||||||| || |||| || ||||| || Sbjct 192417 CCCTGGGTTGAAGTGTGCGCCGGCGGACGTGCAGCCGTTTGTGTTGTCACCAAACTCATG 192476 Query 21258 AACGTGAAAGCCGTG 21272 || || || || || Sbjct 192477 CACATGGAAACCATG 192491 >seq2316 Length=6356476 Score = 93.3 bits (102), Expect = 4e-14 Identities = 171/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || |||||||||| ||| ||||||| ||| | || || ||||| || || ||||| || Sbjct 2659574 TTACCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCG 2659515 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | || ||| | || || | |||||| || || | || | || |||||||| | Sbjct 2659514 GACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGG 2659455 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC-TC 18990 || | |||||||||||| ||||||| |||||| | | | ||| || |||| || Sbjct 2659454 GGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTC-AGAGGCTTC 2659396 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCT 19050 || | || ||||||||||| || | ||||| || || || |||||| | | || Sbjct 2659395 AACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTTGAACT 2659336 Query 19051 CTTATAAA 19058 | ||||| Sbjct 2659335 GTAATAAA 2659328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414553226204356