Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3650 262 3e-65 seq2316 105 6e-18 >seq3650 Length=1334389 Score = 262 bits (290), Expect = 3e-65 Identities = 783/1192 (66%), Gaps = 37/1192 (3%) Strand=Plus/Plus Query 100802 TTCATAACATTTAACAAGTCGCCGTTGTCGGCGTCGATCTCCCAAGCAAATAACCCACCC 100861 ||||| ||||||| | || || ||||| |||||||||||||| || ||||| ||||| Sbjct 960336 TTCATGGCATTTAATAGTTCACCATTGTCTGCGTCGATCTCCCACGCGAATAAACCACC- 960394 Query 100862 AAGCCATTTTGATCCACGTAACTAGTTTTTGCCAATACAGAATCAA-CACTATCAAACGA 100920 |||| ||| || | ||| | ||| ||||| ||| || ||||| ||| Sbjct 960395 AAGCTTATTTTTTCTAACATACTTGCCTTTCTCAATAGTCGATCGTGCATTATCATACGT 960454 Query 100921 TATCAAGTCGCCATTGTCTTTGT--TAAAAACGTAAGATGCTTTAGCGGCCGTGTCAAAT 100978 ||| ||||| ||| ||| || | || ||||||| || | ||| | | || | Sbjct 960455 TATTAAGTCACCA--GTCGATGGCCTGAACACGTAAGGAGCCTCAGCAACATTATCGTAA 960512 Query 100979 TTGTATTTGTACTTGTTTAATTCGTTTTTA------ATTTGGCGATAATCGACAACGCCG 101032 | | ||| | || || | | | | ||| | ||| || || || ||| Sbjct 960513 TGGAATTCCCATTTACCCAAAGCAATCTCATGTGCTATTGCTCTATAGTCAACTACACCG 960572 Query 101033 TCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA---ATAGTTGTCACCG 101089 |||| ||||||||| | || || || | || |||| ||||| || |||||| || Sbjct 960573 TCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGTGAATGGATTGTTGTCTTCG 960632 Query 101090 TCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTG 101149 | || || || || ||||| ||||| |||||||| || |||||||| | ||| || Sbjct 960633 TAATTA--TGA-ACACCAGTCCAGCCGCGTCCGTACATAGCTACGCCCACCACAATCTTC 960689 Query 101150 CGCGGGTCTACGCCCTGGTTCGTGAGCGA---TTTAACAGCGTAATCCGTGTTGTACAGC 101206 |||| ||||| || | ||| | ||| ||| | | || ||| | || Sbjct 960690 TTAGGGTTCACGCCTTGA---GCAAGCAAATATTTCACACCAAAGTCAGTGGTATAAGTT 960746 Query 101207 TCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTGAC 101266 || || ||||||||| || ||||| |||| ||| |||| || || | ||| ||| Sbjct 960747 TCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGATGACCGAGGGTGTCGTTAGAC 960806 Query 101267 CACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAAGA 101326 || |||||||| ||||| || ||||| || || || | || | ||||||| || | Sbjct 960807 CAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCATATACTTTTGAGCTTCA 960866 Query 101327 TCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGTAT 101386 ||| | || || || || || || | ||| || || || | |||||| Sbjct 960867 CTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCGGAGGTCAGCTCGTAT 960926 Query 101387 GTTTTGCCCGTTTGCAGTTGCAAC-TCGTCCAGCATTGCGCGCAATTCTTTCAGTAAAAT 101445 | || || || | | | || |||| || |||| | |||||||| |||| ||| Sbjct 960927 TTCTTACCGGTCT-CTTCAGAAAGGTCGTTCAACATTTCACGCAATTCCTTCATTAA--- 960982 Query 101446 GTTGTACGTGTCAGCGTCGCGTTCTTT---GTTGCCGAGTGTTGGGTTGGCGCCTTTACC 101502 || |||| | | || | ||||| | | ||||| ||||| || || ||||| Sbjct 960983 -TTCAACGTA--AACATCTCCGTCTTTCGGGCTACCGAGGTCGGGGTTAGCTCCCTTACC 961039 Query 101503 ACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATTC 101562 || || || |||||||||||||| || || || || || ||||| | | || || Sbjct 961040 TCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTCAAGAGGAAATC 961099 Query 101563 TTTGACAGAATCCACAAACACACGCCGTTTTATCGCGTCG-TGCATATAATAGAACGGGT 101621 ||| |||||||| || || | | || | |||| || | | | |||| || | Sbjct 961100 TTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTGTCGGTGAAGAAGA-AGAAGGGAT 961158 Query 101622 CGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAATTTGG 101681 ||| | |||||| || |||||||| || | || ||||| | || |||| |||| Sbjct 961159 CGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTTCAGGCCTGGCTTGTTTGA 961218 Query 101682 CCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATACACCTTTCT 101741 | ||| ||||| ||||||||||||||||| || |||||||| | ||| | || |||| Sbjct 961219 GAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAAGACAATCCCTTCT 961278 Query 101742 GCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTTTAAAATCTGAACGGCCCT 101801 | ||||| || | ||||||||||||||||| |||| ||||| |||||| ||||| Sbjct 961279 GTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTTGAAATCTTCTCGGCCGC 961338 Query 101802 GGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCGTCGTTAAGGC 101861 ||| || | || | |||| ||||| || || ||| | | |||||| | || Sbjct 961339 TGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCGTTGATGC 961398 Query 101862 CATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGTGAGAGGTTGGGCAGCGGCA 101921 |||| || || ||||| || ||||| ||||| | ||||| | ||||| || | || | Sbjct 961399 CATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGTCAGGTTAGGAATTGGAA 961458 Query 101922 CTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCTACAAAATACGC 101973 | || || || || || | ||||| ||||||||||| || || || Sbjct 961459 CACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTACGAAGTATGC 961510 >seq2316 Length=6356476 Score = 105 bits (116), Expect = 6e-18 Identities = 176/253 (70%), Gaps = 1/253 (0%) Strand=Plus/Minus Query 19973 TATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTG 20032 ||||||| |||||||| | |||||||||||| || ||||| ||||| || || |||||| Sbjct 2659579 TATCATTA-CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTG 2659521 Query 20033 TAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGA 20092 || ||| || || |||||| || |||||||| || | || | ||| || ||| Sbjct 2659520 TAGTCGGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGA 2659461 Query 20093 TCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCA 20152 || ||| | ||| |||||||| |||||| ||| || | ||| || || Sbjct 2659460 TCTGGGGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAG 2659401 Query 20153 GGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 | ||| || | || |||||||| || || | ||||| || || || |||||| || Sbjct 2659400 GCTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTT 2659341 Query 20213 AAACTCTTATAAA 20225 |||| | ||||| Sbjct 2659340 GAACTGTAATAAA 2659328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419567389452594