Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq593 138 3e-27 seq2316 127 5e-24 seq348 105 2e-17 >seq593 Length=2014934 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| | ||| || | || | || ||||| || |||||||| ||||| Sbjct 755142 ATGCCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCT 755201 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || || ||||| || || | || ||||| || Sbjct 755202 GAAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGG 755261 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || || ||||| || ||||||||||| || | || || || || Sbjct 755262 GGAATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCC 755321 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| ||||| |||||||| || || || ||||| ||||| ||||||||| Sbjct 755322 ACCTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCATT 755372 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||||| | || | ||| ||||| || || || || |||||| Sbjct 754914 ATACCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCA 754973 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || ||||| ||||| |||||||| || | ||||| || || || Sbjct 754974 GAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGG 755033 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| ||||| ||||| ||||| || | |||||| |||||| Sbjct 755034 GGGATACCTTCTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCA 755093 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||| || || | || || || || || ||||| Sbjct 755094 ACCTCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCAT 755143 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | || |||| || | |||||||||||||| || || || || Sbjct 755370 ATTCCTCCTCTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCT 755429 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| || ||||| |||||||| || | ||||| || || || Sbjct 755430 GACAATGTGCGTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGG 755489 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || || || || || |||||||| | || || || || Sbjct 755490 GGAATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCA 755549 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| ||| |||||||| || || | || || || || |||||||| Sbjct 755550 ACCTCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 >seq2316 Length=6356476 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||| ||||| | || | || | ||| ||||| ||||| || || ||||| || Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 2659512 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | || ||||||| ||||| || || || || | ||| || ||||| || || Sbjct 2659511 AATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGGA 2659452 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || ||||| || ||||| || |||||||||||||| | || || | ||| ||| Sbjct 2659451 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAACC 2659392 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || || ||||| || || |||||||| || ||||||||| Sbjct 2659391 TCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 2659344 >seq348 Length=4065129 Score = 105 bits (116), Expect = 2e-17 Identities = 122/163 (75%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 268855 TCTTG-CGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 ||||| |||||||||| | |||||||| ||||| |||||||| |||||| || | Sbjct 3297076 TCTTGGCGTTTTTTGCTGCCTCCGATGGTATTGTTAATGAAAATCTGGTAGAGCGATTTT 3297135 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 ||||| || || ||| |||||| || | |||||||||||||| || ||||| || | Sbjct 3297136 CACAAGAAGTTCAAATTGGTGAAGCAAGGTTCTTTTACGGATTCCAAATTGCTATGGAGA 3297195 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || | || || |||||||| | | |||||||||||||| Sbjct 3297196 ATGTACACTCTGAGATGTATTCATTGCTGATAGATACTTATAT 3297238 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/184 (71%), Gaps = 7/184 (4%) Strand=Plus/Plus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC-----GATAGCGCGCCTT 269123 ||||||| |||||| | || ||||| | ||||||| | || ||| | || Sbjct 3297438 TGTGTGAAAAAAAAGGCAGACTGGGCATTACAATGGATCGCCAGCAAGACAGCAAACTTT 3297497 Query 269124 ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTG 269183 ||||| ||| ||||||| ||||| ||||||||||| || |||||||| || ||||| Sbjct 3297498 --GGAGAGAGGATAGTTGCATTTGCGGCTGTAGAAGGCATCTTCTTTTCCGGAAGTTTTG 3297555 Query 269184 CCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAAT 269243 | | || || ||||||||||| | ||| | ||||| || || || ||| || ||| Sbjct 3297556 CATCAATATTCTGGTTGAAGAAGCGTGGCTTGATGCCCGGTTTGACCTTCAGCAATGAAC 3297615 Query 269244 TGAT 269247 |||| Sbjct 3297616 TGAT 3297619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151341249620792