Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3650 288 8e-73 seq593 84.2 2e-11 >seq3650 Length=1334389 Score = 288 bits (318), Expect = 8e-73 Identities = 614/911 (67%), Gaps = 21/911 (2%) Strand=Plus/Minus Query 30232 TACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCCC 30291 ||||| ||||| |||||||| ||| ||| ||| |||| || ||||| | || Sbjct 961507 TACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGATCGTGTTCCAATTCCT 961448 Query 30292 AACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGAT 30351 ||||| || ||| | | || ||||| | || | |||||||||||||| || ||||| Sbjct 961447 AACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGAGATGGCATCAACGAC 961388 Query 30352 AGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGAG 30411 |||||||| | | || || | ||| | || | ||| ||| || ||||| Sbjct 961387 AGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCTCTTCAGAGATCGTGCAGCGGCCGAGAA 961328 Query 30412 GATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGTG 30471 ||||| ||||| | ||||||||| ||||| ||||||||| |||||||| || ||| || Sbjct 961327 GATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAAACCACAGAAGGGATTG 961268 Query 30472 GGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGACAC 30531 | ||| |||| || || ||||| || |||||||| |||||| | | ||| | | Sbjct 961267 TCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGATGTCTCTCAAACAAGCC 961208 Query 30532 AATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTCTTT 30591 | || || |||| ||| |||| || || || || |||||||| ||| || ||||| Sbjct 961207 AGGCCTGAACTTAAGATCCTACCTTCCATCGGTGGTTGGACACTAGCCGATCCCTTCTTC 961148 Query 30592 AAATTGAGTTCTGCC---GAAAATCGCGCCGTTTTCGTTGAGTCCGCACGAGAGTATTTG 30648 || | | | | || || | | |||||||| || | | || |||| Sbjct 961147 TTCTTCA---CCGACAAGGAGAAGAGAGATCGCTTCGTTGATTCTGTAAAAG---ATTTC 961094 Query 30649 CGC---ACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGTAAA 30705 | | || ||||| || || || || | |||||||| ||||| || || || ||||| Sbjct 961093 CTCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGAGGTAAG 961034 Query 30706 GGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTTATTG 30765 || ||||| ||||| | || | || |||| || |||| || || | ||| || Sbjct 961033 GGAGCTAACCCCGACCTCGG-TAGCCCGAAA--GACGGAGATGTTTACGTTGAATTAATG 960977 Query 30766 AAAGAGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACCAGCTC 30825 || || | | |||||| | ||||| |||||| |||| || || || |||||| |||| Sbjct 960976 AAGGAATTGCGTGAAATGTTGAACGACCTTTCTGAAGAGACCGGTAAGAAATACGAGCTG 960917 Query 30826 ACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTTAATTA---TGAAAATGCG 30882 ||||| || || || || || | ||||| ||| | || |||| |||| || Sbjct 960916 ACCTCCGCTATCAGTGCTGGATGGGATAAGATCCAAGTTGTCGATTACAGTGAA---GCT 960860 Query 30883 CAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCTAAC 30942 ||| ||||| | || || || || |||||| || |||||||||||||| ||||||||| Sbjct 960859 CAAAAGTATATGGACCATATCTTCCTTATGAGTTATGATTTTAAAGGCGCCTGGTCTAAC 960800 Query 30943 ACGGACTTGGGATATCACACTACACTTTATTCACCCTCTTGGAACGCTGAAGAAAAATAT 31002 | | || |||| ||| ||||||| ||||| |||||||| || | |||| ||| Sbjct 960799 GACACCCTCGGTCATCAGACTCCACTTTACGCACCCGCTTGGAACCCTAAGGAAACTTAT 960740 Query 31003 ACTGCCGAGTACGCGACAAAGGAGTTGTTAAAACAAAACGTCAATAGTAAGAAAATAGTG 31062 || | || | | || | ||| | ||| ||| || |||||| || ||| Sbjct 960739 ACCACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGCGTGAACCCTAAGAAGATTGTG 960680 Query 31063 CTAGCTGTTGCAATGTACGGAAGAGGGTGGACGGGTGTGCATGACATAAAAAACAACAAT 31122 | | || || ||||||||| | || ||||| ||||| ||| | || |||||||| Sbjct 960679 GTGGGCGTAGCTATGTACGGACGCGGCTGGACTGGTGTTCATAATTACGAAGACAACAAT 960620 Query 31123 CCCTTTACGGG 31133 || || || || Sbjct 960619 CCATTCACTGG 960609 >seq593 Length=2014934 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 |||||||| || ||| |||||||| ||||| || || | |||| || | || ||| Sbjct 755619 ACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTCC 755678 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||| |||||| || | || | ||||||||| || || | | |||||||| Sbjct 755679 AACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 755738 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | | || || || | || |||| ||| | || ||||| || Sbjct 755739 ATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTG 755798 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATCGTGT 48731 || || | || |||||||||||||||||| ||| Sbjct 755799 CCTGTCAATGTCTTCACAAAAATCTGCATCTTGT 755832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421231310887874