Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2427 127 1e-24 seq392 127 1e-24 seq2316 125 4e-24 seq514 123 1e-23 seq3538 122 5e-23 seq571 118 6e-22 seq2983 116 2e-21 seq763 116 2e-21 seq604 116 2e-21 seq436 116 2e-21 >seq2427 Length=9881032 Score = 127 bits (140), Expect = 1e-24 Identities = 89/101 (88%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || |||| |||||||| ||||| | |||||||||| |||||||||| ||||||||| Sbjct 7101209 AATTATAAAATTAATACAAAATTGA--TGGCCCATGAGGGGATCGAACCCGCGACCTTCG 7101152 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 7101151 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 7101111 Score = 105 bits (116), Expect = 3e-18 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || ||| |||||||| ||||| | |||||||||| |||||||||| ||||||||| Sbjct 7101687 AATTATGAAATTAATACAAAATTGA--TGGCCCATGAGGGGATCGAACCCGCGACCTTCG 7101630 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAG 11519 |||||||||||||||||||| |||||||||| Sbjct 7101629 CGTTATTAGCACGACGCTCTAACCAACTGAG 7101599 >seq392 Length=6741150 Score = 127 bits (140), Expect = 1e-24 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 6604659 AAAAAAT--AATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 6604716 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| |||||||||||||||||||||| Sbjct 6604717 GCTCTAACCAACTGAGCTAATGGGCCGT 6604744 Score = 127 bits (140), Expect = 1e-24 Identities = 91/104 (88%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 11429 AAATATAGAAT-TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| ||||| | |||||||| | |||||||||| |||||||||| |||||||| Sbjct 6617310 AAATAAAGAATATTATAAAAAAGTATTGTGGCCCATGAGGGGATCGAACCCGCGACCTTC 6617369 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 6617370 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 6617413 >seq2316 Length=6356476 Score = 125 bits (138), Expect = 4e-24 Identities = 82/90 (91%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || |||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 886781 AAAATTAA--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 886724 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTCGAC 11535 ||| |||||||||||||||||||||||||| Sbjct 886723 TCTAACCAACTGAGCTAATGGGCCGTCGAC 886694 Score = 118 bits (130), Expect = 6e-22 Identities = 82/94 (87%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||| |||||| | |||||||||| |||||||||| ||||||||||||||||| Sbjct 886092 AATTACAAAAAAACTTATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 886151 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||||||||| Sbjct 886152 GCACGACGCTCTAACCAACTGAGCTAATGGGCCG 886185 >seq514 Length=3389598 Score = 123 bits (136), Expect = 1e-23 Identities = 81/89 (91%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| |||| |||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 2794092 AATAGAAAAA-AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 2794150 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 2794151 GACGCTCTAACCAACTGAGCTAATGGGCC 2794179 >seq3538 Length=1896089 Score = 122 bits (134), Expect = 5e-23 Identities = 79/86 (92%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1007791 AAAAAAT-ATATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1007733 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1007732 GCTCTAACCAACTGAGCTAATGGGCC 1007707 Score = 120 bits (132), Expect = 2e-22 Identities = 71/75 (95%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1004447 TGGCCCATGAGGGGATCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1004388 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 1004387 TGAGCTAATGGGCCG 1004373 Score = 118 bits (130), Expect = 6e-22 Identities = 87/101 (86%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||| | ||||| |||||| || ||||||||| |||||||||| |||||||||| Sbjct 941478 AATAAATGATTAAGAAAAAAGTTTAT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGC 941536 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| ||||||||||||||||||||| Sbjct 941537 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 941577 Score = 118 bits (130), Expect = 6e-22 Identities = 82/93 (88%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || || ||||| || ||||||||||| |||||||||| |||||||||||||||||| Sbjct 1009575 ATCAACAAAAAGTC---TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 1009631 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||| ||||||||||||||||||||| Sbjct 1009632 CACGACGCTCTAACCAACTGAGCTAATGGGCCG 1009664 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1005525 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 1005584 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 1005585 CTGAGCTAATGGGCC 1005599 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1004942 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1005001 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1005002 TGAGCTAATGGGCC 1005015 >seq571 Length=7415456 Score = 118 bits (130), Expect = 6e-22 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3492971 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3493030 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||||||||||| || Sbjct 3493031 TGAGCTAATGGGCCGTTGA 3493049 >seq2983 Length=3449846 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | | |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1314492 AAAAAGCTGAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 1314433 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 1314432 CTCTAACCAACTGAGCTAATGGGCCG 1314407 >seq763 Length=6614576 Score = 116 bits (128), Expect = 2e-21 Identities = 78/87 (90%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 6155720 AAAAAAGTAA--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 6155663 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 6155662 GCTCTAACCAACTGAGCTAATGGGCCG 6155636 >seq604 Length=838550 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 100816 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 100875 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 100876 TGAGCTAATGGGCCGT 100891 >seq436 Length=1479609 Score = 116 bits (128), Expect = 2e-21 Identities = 79/88 (90%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 781257 AAAAAAGAGAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 781316 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 781317 CGCTCTAACCAACTGAGCTAATGGGCCG 781344 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261478853856424