Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2316 134 1e-26 seq1964 125 6e-24 seq593 122 8e-23 seq802 82.4 7e-11 >seq2316 Length=6356476 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| || | |||||||||||| | || |||||||| || | ||| || ||| | Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 2659512 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || ||| || | |||||| ||| | ||||| || |||||||||||||| ||| Sbjct 2659511 AATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGGA 2659452 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | |||||| || || || | | |||||||| | || || Sbjct 2659451 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAACC 2659392 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||| |||||||| || || || ||||| || ||||||||||| Sbjct 2659391 TCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq1964 Length=1360 Score = 125 bits (138), Expect = 6e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 |||||| || | |||||| ||||| || | ||| || ||| | ||||| || |||| Sbjct 257 CACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGG--AGAGTGTACGACCATCC 200 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| ||| || ||| ||||||| | | |||||| |||||||| |||||||| ||||| Sbjct 199 TCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 140 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||| || ||| ||||| | | | || || || | ||||| ||| Sbjct 139 TGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTGTT 80 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || || ||||||||||| Sbjct 79 TTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 48 >seq593 Length=2014934 Score = 122 bits (134), Expect = 8e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||||||| | || | ||| ||||| | ||||||||| || || | Sbjct 755360 AAAAATCTGCATTCCTCCTCTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGAT 755419 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| ||||| || ||| ||| || |||||||| || ||||||| ||||| || Sbjct 755420 GTTGTAATCTGACAATGTGCGTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTG 755479 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| ||||| ||||| ||||||||||| | ||||| ||||| || | | ||||| Sbjct 755480 CTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTGTC 755539 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || | ||||| || || || || | || || || ||||||||||| Sbjct 755540 AGATGGCTCAACCTCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 Score = 114 bits (126), Expect = 1e-20 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||| || || | |||||||| | || ||||||||||| | Sbjct 755133 AAAATTTGCATGCCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATA 755192 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | | ||||| || ||| || ||||| || || ||||||| | | || Sbjct 755193 TTGTAGTC--TGAAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTT 755250 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||||||||| ||||| || || ||||| | |||||| || || || | | |||| Sbjct 755251 GCTGATCTGGGGGAATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGT 755310 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | || || || | ||||| || ||||| || || ||||| ||||| ||||||| Sbjct 755311 CTGATGGCTCCACCTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCA 755370 Query 95007 T 95007 | Sbjct 755371 T 755371 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| |||||||| || ||||||| ||||| ||||| ||||| || |||||||| || Sbjct 754760 ATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTT 754819 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || ||| ||||| | | | || || || | ||||| Sbjct 754820 GTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCTACTTCTAATGTGAT 754879 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| |||||||||||||| Sbjct 754880 AGTCTTGCCTGTCAGGGTTTTAACAAAGATCTGCAT 754915 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || | |||||||| | || ||||||||||| | ||| || || Sbjct 754917 CCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAA 754976 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||| |||||||| || ||||||| ||||| ||||| ||||| || Sbjct 754977 AGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 755036 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||||||||| || | || || || ||||| | | || |||| | || || Sbjct 755037 ATACCTTCTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACC 755096 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | ||| ||||| || || ||||||| Sbjct 755097 TCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCATGC 755145 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || || |||| || ||||||||||| | |||||| ||| || ||| ||| ||| Sbjct 755619 ACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTCC 755678 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||| ||| | ||||| | | ||||| ||||| ||||| || || ||||| | Sbjct 755679 AACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 755738 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||| || | | ||||| | | || || || | |||||||| || Sbjct 755739 ATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTG 755798 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || |||||||| |||||||| Sbjct 755799 CCTGTCAATGTCTTCACAAAAATCTGCAT 755827 >seq802 Length=1346568 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 || ||||| |||||||| || || |||||||| | ||||||||| ||||| | | Sbjct 833167 CTCTGCTGGTCTGGAGGGATTCCCTCTTTGTCTTGAATTTTTGCTTTGACATTTTCAATG 833226 Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 || || | | | || || || | ||||||||||| || || || |||||||| || ||| Sbjct 833227 GTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATC 833286 Query 95003 TGCAT 95007 ||||| Sbjct 833287 TGCAT 833291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448269491498640