Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq2538 320 2e-83 seq392 159 4e-35 seq3783 145 8e-31 >seq2538 Length=3411750 Score = 320 bits (354), Expect = 2e-83 Identities = 315/420 (75%), Gaps = 59/420 (14%) Strand=Plus/Minus Query 15533 AAAAACTAATCAGCTCTTAACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAA 15592 ||||||||||| || || | | ||||||||||||||| ||||| ||||||||||||| Sbjct 3042117 AAAAACTAATCCGCCTTTGAGCTTGAAAAACCACGTCGATCGCCACGAAGCTGGTCAAAA 3042058 Query 15593 TCGGTTGATTCGTTCGAGAGATATCGTGAACGAAAGAAAACCGAAAAAATTGTTTTTTCG 15652 |||||||||||||||||||||| ||||||||||||| | | ||||||| | |||||||| Sbjct 3042057 TCGGTTGATTCGTTCGAGAGATCTCGTGAACGAAAG-ATATCGAAAAAGTGTTTTTTTCG 3041999 Query 15653 GGATTACTCCGAAATTTTCGGTTCGATCAATTAAAACCTGAAAATAACTTATGAGGATGA 15712 ||||||||| ||||||| ||||||||||||||||| ||||| ||||||| Sbjct 3041998 GGATTACTCAGAAATTTGTGGTTCGATCAATTAAAATTGCAAAATTACTTATG------- 3041946 Query 15713 TAAAACTGCGTCGAATGGCACCAACCGCGTGGAAATTGGTTGATCCATTCAAAAGTTATT 15772 || | | ||||||||||| |||||||| || ||||||||| ||||||||||||||| || Sbjct 3041945 -AATAGTACGTCGAATGGCGCCAACCGCATGAAAATTGGTTAATCCATTCAAAAGTTTTT 3041887 Query 15773 GCGGTTTGAAAATTCCAAAAATAGTGTTCTATGAAACTTTTATCAGACTTTTGAGCTGGG 15832 ||| ||||||| ||| |||| Sbjct 3041886 GCG-----------------------------------------AGACTTTCGAGATGGG 3041868 Query 15833 AGAGCTCAAATGCATTAAAATATTATTTCATTGAACTCAGCGAGCTCAAAATATCACATA 15892 ||||||||||||||| |||||||||||| ||| |||||||| |||||||||||||||| Sbjct 3041867 AGAGCTCAAATGCATAGAAATATTATTTCTTTGTACTCAGCGTGCTCAAAATATCACATG 3041808 Query 15893 AATTATATTTTGTGCTTAAAAATCTCAAAAATTTCATAAGTACAATTTTTAGCGCCCAGG 15952 |||||||||||| | ||||||||| | |||| ||||||||| |||||| ||| Sbjct 3041807 AATTATATTTTG---------AGCTCAAAAATGTTATAATTACAATTTTAAGCGCCTAGG 3041757 Score = 152 bits (168), Expect = 5e-33 Identities = 180/242 (74%), Gaps = 10/242 (4%) Strand=Plus/Minus Query 1254 aaaaaCTAATCAGCTCTTAACCATGAAAACCCCCATCGATCGCCAGCAAAAACGTTAGAA 1313 ||||||||||| || || | | |||||| || | |||||||||| || || | || Sbjct 3042117 AAAAACTAATCCGCCTTTGAGCTTGAAAAACCACGTCGATCGCCACGAAGCTGGTCAAAA 3042058 Query 1314 TCGGTTGATGCGTTCGTGAGATATCGTTGTCGaaaaaaatcgaaaaaaGTGttttttt-G 1372 ||||||||| |||||| ||||| |||| ||||| | |||| ||||||||||||||| | Sbjct 3042057 TCGGTTGATTCGTTCGAGAGATCTCGTGAACGAAAGATATCG-AAAAAGTGTTTTTTTCG 3041999 Query 1373 TAATAACTTCGAAATTCATGGCTCGATCGATTTAATCTTGAAAATTTTTTATGGAGCTTC 1432 || ||| |||||| ||| |||||| ||| || | |||||| ||||| Sbjct 3041998 GGATTACTCAGAAATTTGTGGTTCGATCAATTAAAATTGCAAAATTACTTATG------- 3041946 Query 1433 AAAAACTGCGTCGATTGCCGCCAACCGCGTGAAAATCGGTTCATTTATTCAAAAGTTATT 1492 || | | |||||| || |||||||||| ||||||| |||| || ||||||||||| || Sbjct 3041945 -AATAGTACGTCGAATGGCGCCAACCGCATGAAAATTGGTTAATCCATTCAAAAGTTTTT 3041887 Query 1493 GC 1494 || Sbjct 3041886 GC 3041885 >seq392 Length=6741150 Score = 159 bits (176), Expect = 4e-35 Identities = 152/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 15497 TGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTAACATC 15556 || ||| |||| || | || || |||| || | |||||| |||| | || | | Sbjct 1448752 TGTAATTGCTTTTAACTGGCATTATCGATTAACTTAAAAAACGAATCCGTCTTTGAGCTT 1448811 Query 15557 AAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGAGATAT 15616 |||||| ||| ||| || ||||||||||||||||||||||||||||||||||| | || Sbjct 1448812 GAAAAACTACGATGATCGC-ACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGAAACAT 1448870 Query 15617 CGTGAACGAAAGAAAACCGAAAAAATTGTTTTTTCGGGATTACTCCGAAATTTTCGGTTC 15676 | |||||||||| ||||| |||||| ||||||||||||||| ||||| |||| |||| Sbjct 1448871 CTTGAACGAAAG-AAACCCAAAAAAGCGTTTTTTCGGGATTATTCCGATATTTGTTGTTC 1448929 Query 15677 GATCAATTAAAA 15688 |||||||||||| Sbjct 1448930 GATCAATTAAAA 1448941 Score = 129 bits (142), Expect = 6e-26 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 82 AAAAATCGGGAAGTTATTGTTCTCACCCCATTTTACAAAAATCGAGTTTTCATCAGATCT 141 |||| |||||||||||||| | | ||||| |||| | ||||||||||||||||||||||| Sbjct 1448462 AAAATTCGGGAAGTTATTGGTTTTACCCCGTTTTGCGAAAATCGAGTTTTCATCAGATCT 1448521 Query 142 CGACGTTTGAAGGTCACAGAAAGCTTCCCTGACTATTTTTACGATGATGTCCGTAGGTCT 201 ||||||| ||||||| || ||||||||||||||| || |||| || | || |||| Sbjct 1448522 TGACGTTTTAAGGTCATAGGAAGCTTCCCTGACTACTTCGGTGATGTTGGCACTAAGTCT 1448581 Query 202 GTAT 205 |||| Sbjct 1448582 GTAT 1448585 >seq3783 Length=1375417 Score = 145 bits (160), Expect = 8e-31 Identities = 117/143 (82%), Gaps = 9/143 (6%) Strand=Plus/Plus Query 15817 AGACTTTTGAGCTGGGAGAGCTCAAATGCATTAAAATATTATTTCATTGAACTCAGCGAG 15876 ||||||| ||| | ||||||| ||||| || |||||||||||| ||||| |||||||| Sbjct 551605 AGACTTTCGAGATATGAGAGCTTAAATGAATAGAAATATTATTTCTTTGAAATCAGCGAG 551664 Query 15877 CTCAAAATATCACATAAATTATATTTTGTGCTTAAAAATCTCAAAAATTTCATAAGTACA 15936 || ||||||||| |||||||||||||| || ||||||||| ||||||||||| Sbjct 551665 CTGAAAATATCATATAAATTATATTTT---------AAGCTCAAAAATGTCATAAGTACA 551715 Query 15937 ATTTTTAGCGCCCAGGAATAGAA 15959 ||||| |||||||||| || ||| Sbjct 551716 ATTTTAAGCGCCCAGGGATGGAA 551738 Score = 82.4 bits (90), Expect = 8e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 1626 AATGAGCGGGAGGTTGCAGAGATGGCCTTTAGGGTGAACCGTTTTTCTAAtttttttt 1683 ||| ||||||| |||| || ||||||||||| |||||||||||||||||||||||||| Sbjct 551737 AATTAGCGGGAAGTTGTAGGGATGGCCTTTAAGGTGAACCGTTTTTCTAATTTTTTTT 551794 Score = 80.6 bits (88), Expect = 3e-11 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 2 TAGCGGGAAGTTGCACGGATGGCCTTTAGGGTGAACCGTTTTTCTAATTTTT 53 ||||||||||||| | |||||||||||| ||||||||||||||||||||||| Sbjct 551740 TAGCGGGAAGTTGTAGGGATGGCCTTTAAGGTGAACCGTTTTTCTAATTTTT 551791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50948117772364