Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_006647.1 Length=8785 Score E Sequences producing significant alignments: (Bits) Value seq3783 170 1e-38 seq392 159 2e-35 seq2538 145 4e-31 >seq3783 Length=1375417 Score = 170 bits (188), Expect = 1e-38 Identities = 137/169 (81%), Gaps = 21/169 (12%) Strand=Plus/Minus Query 8355 aaaaaaaaaTTAGAAAAATGATTCACT-------------CTGCAACTTCCCGCTAATTC 8401 |||||||||||||||||| | ||||| || ||||||||||||||||| Sbjct 551795 AAAAAAAAATTAGAAAAACGGTTCACCTTAAAGGCCATCCCTACAACTTCCCGCTAATTC 551736 Query 8402 CATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTGAGTTTTTAAGCTCAAAATATA 8461 ||| ||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 551735 CATCCCTGGGCGCTTAAAATTGTACTTATGACATTTTTG--------AGCTTAAAATATA 551684 Query 8462 ATTTATGTGTTATTTTGAGCTCGCTGAGTTCTAAGAAATAATATTTCTA 8510 |||||| || |||||| |||||||||| ||| ||||||||||||||||| Sbjct 551683 ATTTATATGATATTTTCAGCTCGCTGATTTCAAAGAAATAATATTTCTA 551635 >seq392 Length=6741150 Score = 159 bits (176), Expect = 2e-35 Identities = 103/113 (91%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1047 GTGACAACATCGCGGGGGTAGTCAGGGAAGCTTCCTATGACCTTAAAACGTCGAGATCTG 1106 ||| ||||||| | | ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1448574 GTGCCAACATCACCGAAGTAGTCAGGGAAGCTTCCTATGACCTTAAAACGTCAAGATCTG 1448515 Query 1107 ATGAAAACTCGATTTTTGCAAAACGGGGTGAAAACAATAACTTCCCGATTTTT 1159 |||||||||||||||| |||||||||||| ||| |||||||||||||| |||| Sbjct 1448514 ATGAAAACTCGATTTTCGCAAAACGGGGTAAAACCAATAACTTCCCGAATTTT 1448462 >seq2538 Length=3411750 Score = 145 bits (160), Expect = 4e-31 Identities = 109/129 (84%), Gaps = 8/129 (6%) Strand=Plus/Plus Query 8382 CTGCAACTTCCCGCTAATTCCATTCCTGGGCGCTTAAAATTGTACTTATGACATTTTTGA 8441 || ||| |||||||||||||| | ||| |||||||||||||||| |||| |||||||||| Sbjct 3041733 CTACAAGTTCCCGCTAATTCCCTCCCTAGGCGCTTAAAATTGTAATTATAACATTTTTGA 3041792 Query 8442 GTTTTTAAGCTCAAAATATAATTTATGTGTTATTTTGAGCTCGCTGAGTTCTAAGAAATA 8501 | |||||||||||||| ||||| |||||||||| |||||||| | |||||||| Sbjct 3041793 G--------CTCAAAATATAATTCATGTGATATTTTGAGCACGCTGAGTACAAAGAAATA 3041844 Query 8502 ATATTTCTA 8510 ||||||||| Sbjct 3041845 ATATTTCTA 3041853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27995579829464