Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq392 147 6e-31 seq2538 140 9e-29 >seq392 Length=6741150 Score = 147 bits (162), Expect = 6e-31 Identities = 105/121 (87%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 17723 ACAAACATAGTGATAATATCGCGGCAGTAGTCACGGAAGCTTCCTATGATCTTAAAACGT 17782 ||| || ||||| || ||| | | |||||||| ||||||||||||||| |||||||||| Sbjct 1448583 ACAGACTTAGTGCCAACATCACCGAAGTAGTCAGGGAAGCTTCCTATGACCTTAAAACGT 1448524 Query 17783 CGAGATCTGATGTAAACTCGATTTTTGTTAAACGGGGTAAAACCAATAACTTCCCGATTT 17842 | |||||||||| |||||||||||| | |||||||||||||||||||||||||||| || Sbjct 1448523 CAAGATCTGATGAAAACTCGATTTTCGCAAAACGGGGTAAAACCAATAACTTCCCGAATT 1448464 Query 17843 T 17843 | Sbjct 1448463 T 1448463 Score = 111 bits (122), Expect = 4e-20 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 39759 AAAAATCGGGAAGTTATTGGTTTTACCCCCTTTTGTAAAAATTGATTTTTCACTAGATCT 39818 |||| |||||||||||||||||||||||| ||||| ||||| || |||||| |||||| Sbjct 1448462 AAAATTCGGGAAGTTATTGGTTTTACCCCGTTTTGCGAAAATCGAGTTTTCATCAGATCT 1448521 Query 39819 CGACGTTTCAAGGTCTCAGGAAGCTTCTTTGACCACCCCCGTGATGGTG 39867 ||||||| |||||| |||||||||| |||| || | |||||| || Sbjct 1448522 TGACGTTTTAAGGTCATAGGAAGCTTCCCTGACTACTTCGGTGATGTTG 1448570 Score = 111 bits (122), Expect = 4e-20 Identities = 133/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 40137 CTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAATAAACC 40196 ||||||| ||| ||| ||||||| | |||||| ||| | || | || | |||| Sbjct 1448760 CTTTTAACTGGCATTATCGATTAACTTAAAAAACGAATCCGTCTTTGAGCTTGAAAAACT 1448819 Query 40197 ACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGTTGACG 40256 ||| ||| || ||| |||||| ||||||||||||||||| || ||| | ||| Sbjct 1448820 ACGATGATCGCACCAAGCT-GGTCAAAATCGGTTGATTCGTTCGAGAAACATCTTGAACG 1448878 Query 40257 AAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAATTCGTGGTTCAATCAA 40314 |||| ||||| ||||||| |||||||||| |||| ||||| ||| || |||| ||||| Sbjct 1448879 AAAG-AAACCCAAAAAAGCGTTTTTTCGGGATTATTCCGATATTTGTTGTTCGATCAA 1448935 >seq2538 Length=3411750 Score = 140 bits (154), Expect = 9e-29 Identities = 178/244 (73%), Gaps = 11/244 (5%) Strand=Plus/Minus Query 40165 AAAAACTAATTAGCTCTTAACATTAATAAACCACGTCGATTGCTGTCAGCCCGGTCAACA 40224 |||||||||| || || | || | ||||||||||||| || | | |||||| | Sbjct 3042117 AAAAACTAATCCGCCTTTGAGCTTGAAAAACCACGTCGATCGCCACGAAGCTGGTCAAAA 3042058 Query 40225 TCGGTTGATTCGTTCGTGAGTTATCGTTGACGAAAGAAAACCGAAAAAAGTG-TTTTTTC 40283 |||||||||||||||| ||| | |||| |||||||| | | |||||||| ||||||| Sbjct 3042057 TCGGTTGATTCGTTCGAGAGATCTCGTGAACGAAAGATATC--GAAAAAGTGTTTTTTTC 3042000 Query 40284 GGAATTACTCCGAAATTCGTGGTTCAATCAAATTGAACTTAAAGATTTTTTATGAGGCTT 40343 || ||||||| |||||| ||||||| ||||| | || | || ||| ||||| Sbjct 3041999 GGGATTACTCAGAAATTTGTGGTTCGATCAATTAAAATTGCAAAATTACTTATG------ 3041946 Query 40344 AAAAAATTGCGTTGAATGTCACCAACCGCGTAAAAATCGTTCCATTTATTCAAAAGTTAT 40403 || | | ||| ||||| | |||||||| | ||||| | | || ||||||||||| | Sbjct 3041945 --AATAGTACGTCGAATGGCGCCAACCGCATGAAAATTGGTTAATCCATTCAAAAGTTTT 3041888 Query 40404 CGCG 40407 ||| Sbjct 3041887 TGCG 3041884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132905885549580