Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_006660.1 Length=20197 Score E Sequences producing significant alignments: (Bits) Value seq2538 309 4e-80 seq3783 228 1e-55 seq392 93.3 5e-15 >seq2538 Length=3411750 Score = 309 bits (342), Expect = 4e-80 Identities = 351/490 (72%), Gaps = 63/490 (13%) Strand=Plus/Plus Query 9499 CTGa-aaaaaaaTTA---GAAAAACGGTTCACCCTAAAGGCCATCCGTGCAACTTCCCGC 9554 |||| |||||||||| ||||||||||| ||| |||||||||| | | ||| ||||||| Sbjct 3041687 CTGACAAAAAAATTAACAGAAAAACGGTTTACCTTAAAGGCCATTCCTACAAGTTCCCGC 3041746 Query 9555 TAATTCTATTCCTGGGCGCTAAAAATTGTACTTATGACATTTTTGAGATTTTTAAGCACA 9614 |||||| | ||| |||||| ||||||||| |||| ||||||||||| | || Sbjct 3041747 TAATTCCCTCCCTAGGCGCTTAAAATTGTAATTATAACATTTTTGAGCT---------CA 3041797 Query 9615 AAATATAATTTATGTGATATTTTGAGCTCGCTCAGTTCAATGAAATAATATTTTAATGCA 9674 |||||||||| |||||||||||||||| |||| ||| ||| |||||||||||| ||||| Sbjct 3041798 AAATATAATTCATGTGATATTTTGAGCACGCTGAGTACAAAGAAATAATATTTCTATGCA 3041857 Query 9675 TTTGAGCTCTCCCAGCTCAAAAGTGTGATAGAAGTTTCATAGAACACTATTTTTGGAATT 9734 |||||||||||||| ||| ||||| | Sbjct 3041858 TTTGAGCTCTCCCATCTCGAAAGTCT---------------------------------- 3041883 Query 9735 TTCAAACCGCAATAACTTTTGAATGGATCAACCAATTTCCACGCGGTTGGTGCCATTCGA 9794 ||||| ||||||||||||||| ||||||||| || |||||||| ||||||||| Sbjct 3041884 -------CGCAAAAACTTTTGAATGGATTAACCAATTTTCATGCGGTTGGCGCCATTCGA 3041936 Query 9795 CGCAGTTTTATCATCCTCATAAGTTATTTTCAGGTTTTAATTGATCGAACCGAAAATTTC 9854 || | | | |||||||| ||||| ||||||||||||||||| ||||||| Sbjct 3041937 CGTACTAT--------TCATAAGTAATTTTGCAATTTTAATTGATCGAACCACAAATTTC 3041988 Query 9855 GGAGTAATCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTCACGATATCTCTCGAACG 9914 ||||||||||| ||||||||| |||||||||||| Sbjct 3041989 TGAGTAATCCCG-AAAAAAACACTTTTTCGATATCTTTCGTTCACGAGATCTCTCGAACG 3042047 Query 9915 AATCAACCGATTTTGACCAGCTTGGTGGCAATCGACGTGGTTTTTTGATGTTAAGAGCTG 9974 ||||||||||||||||||||||| ||||| ||||||||||||||| | | || || | Sbjct 3042048 AATCAACCGATTTTGACCAGCTTCGTGGCGATCGACGTGGTTTTTCAAGCTCAAAGGCGG 3042107 Query 9975 ATTAGTTTTT 9984 |||||||||| Sbjct 3042108 ATTAGTTTTT 3042117 >seq3783 Length=1375417 Score = 228 bits (252), Expect = 1e-55 Identities = 168/197 (85%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 9502 aaaaaaaaTTAGAAAAACGGTTCACCCTAAAGGCCATCCGTGCAACTTCCCGCTAATTCT 9561 |||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| Sbjct 551794 AAAAAAAATTAGAAAAACGGTTCACCTTAAAGGCCATCCCTACAACTTCCCGCTAATTCC 551735 Query 9562 ATTCCTGGGCGCTAAAAATTGTACTTATGACATTTTTGAGATTTTTAAGCACAAAATATA 9621 || |||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 551734 ATCCCTGGGCGCTTAAAATTGTACTTATGACATTTTTGAGCTT---------AAAATATA 551684 Query 9622 ATTTATGTGATATTTTGAGCTCGCTCAGTTCAATGAAATAATATTTTAATGCATTTGAGC 9681 |||||| ||||||||| |||||||| | ||||| |||||||||||| || ||||| ||| Sbjct 551683 ATTTATATGATATTTTCAGCTCGCTGATTTCAAAGAAATAATATTTCTATTCATTTAAGC 551624 Query 9682 TCTCCCAGCTCAAAAGT 9698 |||| | ||| ||||| Sbjct 551623 TCTCATATCTCGAAAGT 551607 >seq392 Length=6741150 Score = 93.3 bits (102), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 9893 CGTTCACGATATCTCTCGAACGAATCAACCGATTTTGACCAGCTTGGTGGCAATCGACGT 9952 |||||| ||| | ||||||||||||||||||||||||||||||||||| || ||| ||| Sbjct 1448878 CGTTCAAGATGTTTCTCGAACGAATCAACCGATTTTGACCAGCTTGGT-GCGATCATCGT 1448820 Query 9953 GGTTTTTTGATGTTAAGAGCTGATTAGTTTTTGGAATTGATCGGTAGAGCTATTTAAAAG 10012 |||||| | | || | |||| |||||| | || |||| || || | ||||||| Sbjct 1448819 AGTTTTTCAAGCTCAAAGACGGATTCGTTTTTTAAGTTAATCGATAATGCCAGTTAAAAG 1448760 Query 10013 TTATTCCA 10020 ||| || Sbjct 1448759 CAATTACA 1448752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 64509110305920