Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2205 105 7e-18 seq348 104 2e-17 >seq2205 Length=3731788 Score = 105 bits (116), Expect = 7e-18 Identities = 215/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 131860 TCCTATGACTCCTGTTAAACCTATGTTGGCTGATGTATGCGAATCTCTAGAAAAAGCAAT 131919 || |||||| |||||| |||||||| ||||| | ||| ||||| |||||| || || Sbjct 1151106 TCTTATGACACCTGTTTTGCCTATGTTAGCTGAAGCATGTAAATCTATAGAAATGGCTAT 1151047 Query 131920 AGATAAATATAAAGATGGAATGTATTCAGAGGTAAAATATGATGGGGAGCGTGTACAAAT 131979 | |||| | | | ||||||| || || ||||||||||||| || | || ||| | Sbjct 1151046 GAAGAAATGTCCAAACGGAATGTTCTCGGAAATAAAATATGATGGTGAAAGAGTTCAAGT 1150987 Query 131980 TCATAAAAAAGATAATGTATACAATTATTTTAGTAGAAATTTAAAACCTGTTCTTACTCA 132039 ||||||||||| | || || || |||||| | || | | || |||| | | || Sbjct 1150986 TCATAAAAAAGGTTCTGAATTTAAATATTTTTCTCGAGCTCTTAAGGCTGTAATGGCACA 1150927 Query 132040 TAAAATTGATGGATTTGATA-AACTGTTGACTGATGCATTTCCCACAGCAAAAAACTTCA 132098 |||| | || |||| | | || ||| | | |||||||| | || | | || Sbjct 1150926 TAAAGTAAAT-CATTTAAAAGAATATTTGCCGAAGGCATTTCCTAAAGGTACCGATTTGG 1150868 Query 132099 TTTTAGATGCGGAATTAATAATGATAGATACAAAATCAAATTCATTTTTACCATTTGGTT 132158 | ||||||| ||| | || || | ||| ||| | | ||||||||||||| Sbjct 1150867 TACTAGATGCAGAAATTTTACTGGTTGATGTGAAAACTGGGAAACCTTTACCATTTGGTA 1150808 Query 132159 CATTAGGTATACATAAA 132175 ||||||||||||| ||| Sbjct 1150807 CATTAGGTATACACAAA 1150791 >seq348 Length=4065129 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 |||||| ||||| |||| ||| || || || || || ||||||||||| | ||||| || Sbjct 3297215 ATACATCTCAGAGTGTACATTCTCCATAGCAATTTGGAATCCGTAAAAGAACCTTGCTTC 3297156 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 | |||||| || ||||||| | ||| |||||||| || || ||||| Sbjct 3297155 ACCAATTTGAACTTCTTGTGAAAATCGCTCTACCAGATTTTCATTAACAATACCATCGGA 3297096 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 ||| |||||||| ||||| | || ||||||||||| | || || |||| ||| Sbjct 3297095 GGCAGCAAAAAACGCCAAGACATGTTTTATAAAATGCCTCTCACAGTCCTTTAAACTTTC 3297036 Query 21949 CCAATCTAATAAATC 21963 ||||||| ||||||| Sbjct 3297035 CCAATCTGATAAATC 3297021 Score = 100 bits (110), Expect = 3e-16 Identities = 159/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||||||| || | |||||| || || ||||||||||| || || | ||| || Sbjct 3297631 TCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCTTC 3297572 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 ||||| |||||||| ||||| ||| |||||||| ||||| || || || ||||||||| Sbjct 3297571 AACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATGCA 3297512 Query 21620 ACTAATCGTTCACCGTATGTAGAT-TCTTTATCCAATATCCATTTTTCTGCCCATTTTGC 21678 |||| | || || | | | | |||| | ||||||| | |||||| | ||| Sbjct 3297511 ACTATCCTCTCTCCAAAGTTTGCTGTCTTGCT-GGCGATCCATTGTAATGCCCAGTCTGC 3297453 Query 21679 CTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA-AAGA 21721 ||||| ||| | |||| | || ||||| || || || |||| Sbjct 3297452 CTTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAACAAGA 3297409 Score = 100 bits (110), Expect = 3e-16 Identities = 126/169 (75%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 21098 TATTTATTCAGCTTTATAAA-AATATTTATTTAAAAATCAGCATCTAATGAGAAAACATT 21156 || ||||| ||||| |||| ||||| |||||||| || |||||||||| ||| ||||| Sbjct 3299857 TAATTATTTAGCTTATTAAATAATATAAATTTAAAACTCTGCATCTAATGTGAACACATT 3299798 Query 21157 ATCTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAA 21216 ||| | | || | ||| | ||| || || || || | ||| | || || || || Sbjct 3299797 ATCCATTCTGTTGGCCATCACCCCCCACTTCTGGTACTCTCCCACTTTCTTCTCAAAGAA 3299738 Query 21217 ATTTGTCTTTCCTTCCAATGATAT-AGATTCCATAAAATCAAATGGATT 21264 |||||||| || || |||||||| |||||| || || ||||||||||| Sbjct 3299737 GTTTGTCTTACCCTCTAATGATATCAGATTC-ATGAAGTCAAATGGATT 3299690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531875042703760