Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2316 509 2e-139 seq348 114 2e-20 seq2205 105 8e-18 >seq2316 Length=6356476 Score = 509 bits (564), Expect = 2e-139 Identities = 1193/1788 (67%), Gaps = 28/1788 (2%) Strand=Plus/Plus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||| | ||||| ||||| | | | || || || |||||| ||| |||||||| Sbjct 2965197 TTGTCAACCGTGAACTGAATAGCATTAGCAGCAGGCTTTATACGTAAATAATACATTCCT 2965256 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||| | ||| | ||||| ||||||| || || || | ||| |||| |||| Sbjct 2965257 GTTTTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTTTCCATAATTCGGT 2965316 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || || | ||| || || | |||||||||||| || || || || || | || |||||| Sbjct 2965317 TCAGCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGCC 2965376 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62224 ||||| || | || || | ||| ||||||| |||||||| || || || ||| || Sbjct 2965377 ATTTTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCT-AATGTC 2965435 Query 62225 TTCTGGAAG--GTTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62281 | ||| | | | | |||| |||||||| ||| | || ||| ||| || || Sbjct 2965436 CTTTGGTATACGCTCGATATTTTGAATGGAACCATTGTTGTGAATTATCAGATTTTTCAT 2965495 Query 62282 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62341 || || | |||||| | | || || || ||| | | ||| | ||||| || || Sbjct 2965496 GTCGTCGTCCCATAAATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTAACAACCTG 2965555 Query 62342 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62401 ||||| |||||||| || | | |||||| || ||| | ||||| | || || Sbjct 2965556 GAATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAGGATTC 2965615 Query 62402 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62461 ||| |||||||| ||||| || || || || || ||||| || || | || | ||| Sbjct 2965616 ATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGCGAATT 2965675 Query 62462 TCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62519 | || || ||||| | ||||| ||||||| | ||| | ||| ||||| || Sbjct 2965676 GCGCAGCCC--ATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCAGAT 2965733 Query 62520 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62578 || ||| | ||| || | || || | || |||| |||| Sbjct 2965734 GGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACT-TCCTTCATA 2965792 Query 62579 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62638 |||| || |||||| | | || ||||| ||||| || |||||||| |||||||| Sbjct 2965793 TGTACTATAAACTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAATA 2965852 Query 62639 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 62698 || ||||||||||| | | || || | ||| | || ||| | ||| Sbjct 2965853 TATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTCATAAGGAATGCG 2965912 Query 62699 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62758 | |||| ||| | || ||||| ||||| || ||||| || || ||||| || | | | Sbjct 2965913 CATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGCAT 2965972 Query 62759 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62818 || || | | |||||||| | || ||| |||||| ||| ||||||||||| || || Sbjct 2965973 GTTGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTT 2966032 Query 62819 TCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT--AT 62875 | |||| ||||| || || ||| || ||| | || |||| || Sbjct 2966033 TTGTGTGATTATCTTTGTG-ACTTCTCTCAACTTTGTAAAGTTGTATGTTTTATCTTCAT 2966091 Query 62876 TA-CAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62934 || ||||| ||||||| |||| ||| || | ||||||||| || || |||| || | Sbjct 2966092 TAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGAAG 2966151 Query 62935 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 62994 |||| | || || ||||| | |||||| || || || || || | ||||| ||||| Sbjct 2966152 TGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGAT 2966211 Query 62995 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63054 | || ||| ||||||| | ||| ||||| | || |||| || || ||||| | || | Sbjct 2966212 TGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTGTG 2966271 Query 63055 ATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTATCTCCT 63109 |||||| || |||||||| | || |||| ||| ||| | ||||| | Sbjct 2966272 CTTCTATGATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAA-----ATCTCTT 2966326 Query 63110 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169 ||| ||| ||| | ||| ||| ||| || || ||||||||| | | | | || Sbjct 2966327 TTCCTCTTCATATTGCCCATATAATGCTTCAAATTCTTCTCCCCAACAGTCGGCAAGACC 2966386 Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229 || || |||| || ||||| || |||| | | || | | || || |||||||| Sbjct 2966387 GGGGCAATCATGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGCTTCATAAA 2966446 Query 63230 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289 | ||| || ||||| | || |||||| ||||||| ||| ||| || || || || Sbjct 2966447 CAAATCTGGGATCCATAATGCATAAAATAGTTCTCTGGCTCTGACTTCTTCTTTGCCAGT 2966506 Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 ||||||||| ||||| | ||| | | | |||||| ||||| ||||| ||||| || || Sbjct 2966507 ATTCTTTTTCAGATCTAAAAACTCAAACACATCAGAGTGCCAGGGTTCTAAGTAAATAGC 2966566 Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409 | | || || |||||||| ||||| || || | || || || || ||||| || || Sbjct 2966567 AAATGCACCTGGTCGTTTGTTGCCTCCTTGGTCAACATACCTTGCTGTATTATTGTACAC 2966626 Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACT 63469 || ||||||||| | || ||| || |||| ||| || ||||| | ||||| | || | Sbjct 2966627 TCGCAACATTGGTACAAGACCATTGGATACACCGTTAGTACCTGCTATATAAGTACCTTT 2966686 Query 63470 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63529 || | |||| | || ||| || || || || || ||| ||||||||||| || Sbjct 2966687 TGCTCTAATACAATGAACATGTAGTCCAATGCCACCAGCTGATTTTGAGATTAATGCACA 2966746 Query 63530 TCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAAC 63588 | |||||| |||||||| ||||| || ||||| ||||| |||| | || | || || | Sbjct 2966747 TTGTTTTAGTGTGTCATATATACCTTCAATGCTGTCATCTTTCATAGCTATG-AGGAAGC 2966805 Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 | ||||| ||| | | |||| | ||| ||||| || ||| || || |||| Sbjct 2966806 AAGAAGACAATTGTGGTCTCGGAGTTGCTGCAGAGAATAATGTGGGACTGGCATGTGTAA 2966865 Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63708 | |||||||||| | || ||||| || ||||| ||||| || || || ||| | Sbjct 2966866 AGTATTTTTCAGACAATAAGTTGTAGGTTTCAATGGCTGAATCAATGTCTTCACCATGGA 2966925 Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63756 |||| | || ||| ||||| | ||| ||||| ||||||||| | |||| Sbjct 2966926 TTCCAATTGAGACCCGCATCAGCATATGCTGGGGTCTTTCAGCAATCT 2966973 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 63959 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 64018 |||| |||| || ||||| ||||||| ||| |||| |||| ||| || ||||| | || Sbjct 2967855 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTAGCAGCTAGTACAGC 2967913 Query 64019 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64078 ||||| ||||| | ||| || |||||| || |||| || || | | |||||||||| Sbjct 2967914 GTAATCTGGATGATCTGTTGTCATAGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTC 2967973 Query 64079 TACCGTTGTTACTCC 64093 || ||||||||||| Sbjct 2967974 CACAGTTGTTACTCC 2967988 >seq348 Length=4065129 Score = 114 bits (126), Expect = 2e-20 Identities = 159/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || ||| ||| ||||| ||| || || | |||||||| | ||||||||| | Sbjct 3297633 CCTCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCT 3297574 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| ||||| || || || ||| ||||||||||| |||||||| || ||||| | Sbjct 3297573 TCAACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATG 3297514 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33500 ||| | |||||||| || |||||| || ||||| | | ||||| || Sbjct 3297513 CAACTATCCTCTCTCC--AAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTC 3297456 Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 ||||| ||||| |||||||| | || || |||||||| || Sbjct 3297455 TGCCTTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAA 3297414 Score = 111 bits (122), Expect = 2e-19 Identities = 144/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 33554 TTTCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAAT 33611 |||| ||| ||| | | ||||||||| |||| || || |||||| || || || | Sbjct 3297255 TTTCTTTAGGGTCTCTGATATAAGTATCTATCAGCAATGA--ATACATCTCAGAGTGTAC 3297198 Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671 || || || || || || |||||||| || | || || || ||| || |||||| Sbjct 3297197 ATTCTCCATAGCAATTTGGAATCCGTAAAAGAACCTTGCTTCACCAATTTGAACTTCTTG 3297138 Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 ||||||| || ||| ||||||||| || || || || ||| |||||||||||||| Sbjct 3297137 TGAAAATCGCTCTACCAGATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAA 3297078 Query 33732 TACATGTTTTATAAAAT 33748 |||||||||||||||| Sbjct 3297077 GACATGTTTTATAAAAT 3297061 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || |||| ||| ||||| ||||||||||| ||||| || ||||||||||| ||||| | | Sbjct 3296936 TTGGATAGATCAACTTCCTCCACTGTCCAGAATGAAGCTTCTGCCTTTTTGTACATTTGC 3296877 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 ||||| ||| ||||||||| ||||| || || || Sbjct 3296876 CAGATATCAGGATATTGGATGGGGAAGATGACGAA 3296842 >seq2205 Length=3731788 Score = 105 bits (116), Expect = 8e-18 Identities = 214/317 (68%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 156556 TTATGACTCCAATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTTTA 156615 ||||||| || || || |||||||| ||| | ||| | ||| | | | ||| | | Sbjct 1151104 TTATGACACCTGTTTTGCCTATGTTAGCTGAAGCATGTAAATCTATAGAAATGGCTATGA 1151045 Query 156616 AAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTC 156675 | |||| |||| |||||||| ||||| | ||||| |||||||||||||| ||||||| Sbjct 1151044 AGAAATGTCCAAACGGAATGTTCTCGGAAATAAAATATGATGGTGAAAGAGTTCAAGTTC 1150985 Query 156676 ATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATA 156735 ||||||| | || ||| | ||| | || | || | ||| | | |||| Sbjct 1150984 ATAAAAAAGGTTCTGAATTTAAATATTTTTCTCGAGCTCTTAAGGCTGTAATGGCACATA 1150925 Query 156736 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTAT 156795 |||| || || | |||||||| | ||||| |||||| |||| ||| | | ||| Sbjct 1150924 AAGTAAATCATTTAAAAGAATATTTGCCGAAGGCATTTCCTAAAGGTACCGATTTGGTAC 1150865 Query 156796 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTCCCGTTTGGAAGTT 156852 | ||| | |||||| | || || || | | | || ||| | || ||||| | | Sbjct 1150864 TAGATGCAGAAATTTTACTGGTTGATGTGAAAACTGGGAAACCTTTACCATTTGGTACAT 1150805 Query 156853 TAGGAATACACAAAAAG 156869 |||| ||||||||| || Sbjct 1150804 TAGGTATACACAAACAG 1150788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622917033781840