Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3650 315 7e-81 seq359 89.7 5e-13 seq1964 86.0 6e-12 >seq3650 Length=1334389 Score = 315 bits (348), Expect = 7e-81 Identities = 811/1217 (67%), Gaps = 30/1217 (2%) Strand=Plus/Minus Query 62039 AAAGTCGTTGCCGCATATTTTGTCGAATGGGGCGTTTATCCTAGAAACTTTCCTGTAGAT 62098 ||||| |||| ||||| || || |||||||| || || || ||||| || || || ||| Sbjct 961522 AAAGTTGTTGGAGCATACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGAT 961463 Query 62099 CGAGTGCCTACTCCTAATCTATCGCATGTTCTCTATGGATTTATTCCTATATGCGGCGGC 62158 || || || | |||||| || | ||| | || || || || ||||| || ||||| || Sbjct 961462 CGTGTTCCAATTCCTAACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGA 961403 Query 62159 GACGGCATTAACGACAGTCTCAAGACCATAACCGGTAGTTTTGAAGCTCTTCAGCGGTCG 62218 || ||||| |||||||| | || || || ||||| ||||||||||| | ||| Sbjct 961402 GATGGCATCAACGACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCTCTTCAGAGATCG 961343 Query 62219 TGTTCGGGTCGAGACGACTTTAAAGTGTCGATTCATGACCCGTGGGCTGCCGTCCAGAAA 62278 || || ||||| || || ||||| || ||||| || || ||||| || | |||||| Sbjct 961342 TGCAGCGGCCGAGAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAAA 961283 Query 62279 CCACAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTTGGTCAATTGATG 62338 ||||| || | | | | ||||||||||| |||||||| || ||||| || ||||| Sbjct 961282 CCACAGAAGGGATTGTCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGATG 961223 Query 62339 GCAGCCAAACTGGCGAATCCTCACATTAAAGTGTTACCTTCGATAGGCGGCTGGACATTA 62398 | ||||| || | ||| | |||| | ||||||| || || || |||||| || Sbjct 961222 TCTCTCAAACAAGCCAGGCCTGAACTTAAGATCCTACCTTCCATCGGTGGTTGGACACTA 961163 Query 62399 TCCGATCCGTTCTTTTATTTTCA-CGATGTGGCCAAACGCAAGAT--TTTTGTCGATTCC 62455 ||||||| ||||| | | |||| ||| || | | | |||| || || ||||| Sbjct 961162 GCCGATCCCTTCTTCT-TCTTCACCGACAAGG--AGAAGAGAGATCGCTTCGTTGATTCT 961106 Query 62456 GTCATAGAATTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGATTGGGAGTTT 62515 || | ||| || | ||||||||| || ||||||||||| |||||||||||||| || Sbjct 961105 GTAAAAGATTTCCTCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTC 961046 Query 62516 CCCGGCGGGAAAGGCGCCAATCCCAACGTAGGCGACGTCGAACGCGATCGCGAAACGTAC 62575 || || || || || || || ||| || | || | |||| | || || | || Sbjct 961045 CCTGGAGGTAAGGGAGCTAACCCCGACCTCGG-TAGCCCGAAAG---ACG-GAGATGTTT 960991 Query 62576 ACGAT--TCTGTTGAGAGATTTACGCGAAGCCCT---CGACCGTCTCTCAATCGAAACGA 62630 ||| | | ||| || || || ||| | ||||| | ||| || || || Sbjct 960990 ACGTTGAATTAATGAAGGAATTGCGTGAAATGTTGAACGACC-TTTCTGAA--GAGACCG 960934 Query 62631 ATCGAACGTACGAATTGACTAGCGCGATCAGCGCCGGCGATGACAAAATTGCCGTAGTCG 62690 | | ||||| |||| ||| ||||| || || || || || || |||| Sbjct 960933 GTAAGAAATACGAGCTGACCTCCGCTATCAGTGCTGGATGGGATAAGATCCAAGTTGTCG 960874 Query 62691 ATTACACTGAAGCGCAAAAATATTTGGATTATAtttttttAATGACATACGATTTCAAAG 62750 |||||| |||||| ||||| ||| |||| |||| || | |||| || ||||| |||| Sbjct 960873 ATTACAGTGAAGCTCAAAAGTATATGGACCATATCTTCCTTATGAGTTATGATTTTAAAG 960814 Query 62751 GAGCTTGGTCGAATAGCGATTTGGGATATCAAACGACTCTGTACGCGCCTTCGTTTAACC 62810 | || ||||| || | | || |||| || | || ||||| || | | |||| Sbjct 960813 GCGCCTGGTCTAACGACACCCTCGGTCATCAGACTCCACTTTACGCACCCGCTTGGAACC 960754 Query 62811 CTAAAGAGCATTATACGACCGATTTTGCCGTTCGTGCTATGCTCAAGCAAAAAGTCGAAA 62870 |||| || |||||| || || |||| || | |||| ||| || ||| Sbjct 960753 CTAAGGAAACTTATACCACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGCGT-GAAC 960695 Query 62871 AC-AAAAAGATTATAGTCGGCGTGGCCATGTACGGTCGAGGTTGGACCGGCGTCGGTGAC 62929 | || |||||| | || ||||| || |||||||| || || ||||| || || | | Sbjct 960694 CCTAAGAAGATTGTGGTGGGCGTAGCTATGTACGGACGCGGCTGGACTGGTGT---TCAT 960638 Query 62930 TTTGTCGACGAAAATAATCCATTTTCCGGCACGGCTAAGGGACCGATCAAAGGTACCTGG 62989 | ||| || || |||||||| | |||| || | ||||| |||||||||| ||| Sbjct 960637 AATTACGAAGACAACAATCCATTCACTGGCAACGCGACTGGACCAGTCAAAGGTACTTGG 960578 Query 62990 GAGGACGGAGTCGTCGATTATAGAGAGATTTTTAATTCTTTTG---TGGGTAAAGACGGC 63046 | ||||| || || || ||||||| || || ||| |||||||| || Sbjct 960577 CAAGACGGTGTAGTTGACTATAGAGCAATAGCACATGAGATTGCTTTGGGTAAA-TGGGA 960519 Query 63047 ATTAATCGTTACGATTCCATCGCAAAAGCGGCATACGTCTTTAATAACGCGACCGGCGAT 63106 ||| | ||||||| | || | || | ||||| || | |||| || || Sbjct 960518 ATT--CCATTACGATAATGTTGCTGAGGCTCCTTACGTGTTCAGGCCATCGACTGGTGAC 960461 Query 63107 CTCATAACCTACGACAGTCCTCAGTCGGTTCTGGATAAAGCAAAATATGTTTTGGACTAT 63166 | ||||| || || | | | | ||| | | || |||| || |||||| | || Sbjct 960460 TTAATAACGTATGATAATGCACGATCGACTATTGAGAAAGGCAAGTATGTTAGAAAAAAT 960401 Query 63167 AATCTGGGTGGTCTGTTCGCGTGGGAGATCGATGCTGACAACGGATTGCTTCTAAACGCA 63226 || || |||||| | ||||||||||||||||| || ||||| || || |||| || Sbjct 960400 AAGCTTGGTGGTTTATTCGCGTGGGAGATCGACGCAGACAATGGTGAACTATTAAATGCC 960341 Query 63227 ATGAACAGCGGTCTCGG 63243 ||||||| ||||| || Sbjct 960340 ATGAACATGGGTCTTGG 960324 >seq359 Length=3483218 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729 |||| ||||||||||| ||||| |||| || | ||||| ||| || || || || | Sbjct 2607129 AAACTCATGATGAACTGTGGAACTCTGCACAACTGCAGCTCGTCAAAGAAGGCAAGATGC 2607188 Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789 | || | || || ||||||||| ||| |||||||| || ||||| | | ||| || Sbjct 2607189 ATGGCTTTCTTCGTATGTACTGGTGCAAGAAGATTCTAGAATGGACGCCGAGTCCAGAAG 2607248 Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTA 71849 | ||||| | ||| | || ||| | || ||| ||||| | || || | ||||||| Sbjct 2607249 ATGCGCTTAAATATGCAATATATTTGAATGATCATTACAGCATAGATGGCAGAGATCCTA 2607308 Query 71850 ACGGTTATGTCGGT 71863 | || | ||| ||| Sbjct 2607309 ATGGATTTGTTGGT 2607322 >seq1964 Length=1360 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| ||| | |||||| | ||| | ||| | Sbjct 48 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAAACAATCACCCTAGAAGTTGAACCCTCG 107 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| ||||| ||||| || ||||| || || Sbjct 108 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 167 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | | |||||| || | || |||| | | | || |||||| ||| Sbjct 168 CAACGTCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGTCGTACACTCTCCGACTACAAC 227 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || |||||| | ||| |||| || Sbjct 228 ATCCAGAAGGAGTCTACTCTTCATTTGGTGCT 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478639220773280