Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2316 141 2e-28 >seq2316 Length=6356476 Score = 141 bits (156), Expect = 2e-28 Identities = 537/832 (65%), Gaps = 22/832 (3%) Strand=Plus/Minus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 |||| |||| | || ||||||||| | ||||| || | ||||| |||||| | || Sbjct 2966971 ATTGCTGAAAGACCCCAGCATATGCTGATGCGGGTCTCAATTGGAATCCATGGTGAAGAC 2966912 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA------TTCACGCAC 363555 ||||| | || |||||||| || || || | || || || | || || || Sbjct 2966911 ATTGATTCAGCCATTGAAACCTACAA----CTTATTG-TC-TGAAAAATACTTTACACAT 2966858 Query 363556 GCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT 363615 |||| || ||| | | | ||| | ||||| | ||||| ||||||||||||| || Sbjct 2966857 GCCAGTCCCACATTATTCTCTGCAGCAACTCCGAGACCACAATTGTCTTCTTGCTTCCTC 2966798 Query 363616 CTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTT 363675 || ||||| || || ||| || ||||| | ||||||||| || | ||||| | Sbjct 2966797 ATAGCTATGAAAGATGACAGCATTGAAGGTATATATGACACACTAAAACAATGTGCATTA 2966738 Query 363676 ATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGT 363735 || || || || || || ||||| || | || | || | ||| | | | Sbjct 2966737 ATCTCAAAATCAGCTGGTGGCATTGGACTACATGTTCATTGTATTAGAGCAAAAGGTACT 2966678 Query 363736 TACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 || || || || | || || || ||||| || || || ||| | || |||| | Sbjct 2966677 TATATAGCAGGTACTAACGGTGTA-TCCAATGGTCTTGTACCAATGTTGCGAGTGTACAA 2966619 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 ||||| || ||||| || ||||| || || || || ||| || |||||||| || Sbjct 2966618 TAATACAGCAAGGTATGTTGACCAAGGAGGCAACAAACGACCAGGTGCATTTGCTATTTA 2966559 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAA 363914 | || || || | ||| | ||||||||| | || || || || || || || Sbjct 2966558 CTTAGAACCCTGGCACTCTGATGTGTTTGAGTTTTTAGATCTGAAAAAGAATACTGGCAA 2966499 Query 363915 AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 ||| ||| | | || | || || || |||||| | ||| | | || |||||||| Sbjct 2966498 AGAAGAAGTCAGAGCCAGAGAACTATTTTATGCATTATGGATCCCAGATTTGTTTATGAA 2966439 Query 363975 GCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTC 364034 ||| || || || | | | ||| | | ||||| || || || || |||||| | Sbjct 2966438 GCGTGTTGAAAAAGATGAAATGTGGAGTTTAATGTGCCCTCATGATTGCCCCGGTCTTGC 2966379 Query 364035 CGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA--A 364091 ||| ||| ||||| || || | || || |||| | | |||||| |||| || | Sbjct 2966378 CGACTGT-TGGGGAGAAGAATTTGAAGCATTATATGGGCAATATGAA---GAGGAAAAGA 2966323 Query 364092 GGCTCGTAAGACAATTCC-CGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTG 364150 | | || | ||| ||| || || | || ||| || ||||| || | || | | Sbjct 2966322 GATTTGTTAAGCAAGTCCGAGCTCAAGAACTGTGGAAAGCAATCATAGAAGCACAAGTGG 2966263 Query 364151 AGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGC 364210 | ||||| ||||| |||||||| || |||||||| || ||| | || ||| || | Sbjct 2966262 AAACAGGCACACCATATATGTTATATAAAGATTCTTGTAACAGAAAAAGCAATCAAAAAA 2966203 Query 364211 ACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 | ||||| || ||| | || || | || || || ||| |||||||||| Sbjct 2966202 ATCTTGGCACCATTAAATGCAGTAATTTGTGCACAGAAATTGTTGAATACAC 2966151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303288907229468