Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3650 345 4e-90 seq593 84.2 2e-11 seq3450 82.4 7e-11 >seq3650 Length=1334389 Score = 345 bits (382), Expect = 4e-90 Identities = 819/1225 (67%), Gaps = 37/1225 (3%) Strand=Plus/Minus Query 55813 TGGATAAAATCGTTGCCGCATATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTG 55872 |||| ||| | |||| ||||| || || || |||||||| || | ||||| || || | Sbjct 961526 TGGA-AAAGTTGTTGGAGCATACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAG 961468 Query 55873 TCACTCGAGTTCCCACTCCTAATCTGTCACACATTCTCTACGGATTCATACCGATATGCG 55932 || ||| ||||| | |||||| ||| | || | || ||||| ||||| || || |||| Sbjct 961467 TCGATCGTGTTCCAATTCCTAACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCG 961408 Query 55933 GCGGCGACGGCATTAACGACAGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGC 55992 | || || ||||| |||||||| | || ||| || ||||| |||| |||||| Sbjct 961407 GTGGAGATGGCATCAACGACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCTCTTCAGA 961348 Query 55993 GATCGTGTTCGGGTCGAGACGACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCC 56052 ||||||| || ||||| || |||||||| || ||||| || || ||||| || | | Sbjct 961347 GATCGTGCAGCGGCCGAGAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTC 961288 Query 56053 AAAAGCCCCAAAAACAAGTGACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAAT 56112 | || || || || | || | | ||||||||||| ||||||||||||||||| || Sbjct 961287 AGAAACCACAGAAGGGATTGTCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGC 961228 Query 56113 TGATGGCAGCTAAACTGGCGAATCCCCATGTTAAAGTGCTGCCTTCGATCGGTGGCTGGA 56172 ||||| | |||| || | || | |||| | || ||||| |||||||| |||| Sbjct 961227 TGATGTCTCTCAAACAAGCCAGGCCTGAACTTAAGATCCTACCTTCCATCGGTGGTTGGA 961168 Query 56173 CTTTATCCGATCCGTTCTTTTACTTTCACGATGCGGTCAAACGCAAAATTTTTGTCGATT 56232 | || ||||||| ||||| | ||| ||| || || | | || || |||| Sbjct 961167 CACTAGCCGATCCCTTCTTCTTCTTCACCGACAAGGAGAAGAGAGATCGCTTCGTTGATT 961108 Query 56233 CTGTCGTCGAGTTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGACTGGGAGT 56292 |||| || || | ||||||||| || ||||||||||| |||||||| ||||| | Sbjct 961107 CTGTAAAAGATTTCCTCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAAT 961048 Query 56293 TTCCCGGCGGAAAGGGGGCCAATTCCAACGTCGGCGATGCCGAACGCGATCGCAACACGT 56352 | || || || ||||| || || || || |||| | ||||| | || | | || Sbjct 961047 TCCCTGGAGGTAAGGGAGCTAACCCCGACCTCGG-TAGCCCGAAAG---ACG-GAGATGT 960993 Query 56353 ACACGATTCTGTTACGA--GATTTACGCGAAGCGCTAGACCGA-CTAAGCCTCGAAACGA 56409 ||| | | | || || || || ||| | | || ||| || || || Sbjct 960992 TTACGTTGAATTAATGAAGGAATTGCGTGAAATG-TTGAACGACCTTTCTGAAGAGACCG 960934 Query 56410 ATCGAACATACGAGCTAACCAGCGCCATTAGCGCCGGCGATGACAAAATCACGGTCGTCG 56469 | | ||||||||| ||| ||| || || || || || || ||| || |||| Sbjct 960933 GTAAGAAATACGAGCTGACCTCCGCTATCAGTGCTGGATGGGATAAGATCCAAGTTGTCG 960874 Query 56470 ACTACACAGCCGCTCAAAAATATTTAGATTATAtttttttGATGACATACGATTTTAAAG 56529 | |||| | |||||||| ||| | || |||| || | |||| || |||||||||| Sbjct 960873 ATTACAGTGAAGCTCAAAAGTATATGGACCATATCTTCCTTATGAGTTATGATTTTAAAG 960814 Query 56530 GCGCTTGGTCGAATAGCGATCTGGGCTATCAGACGACTTTGTACGCGCCTGCGTTTAATC 56589 |||| ||||| || | || || ||||||| | | ||||| || || | || | Sbjct 960813 GCGCCTGGTCTAACGACACCCTCGGTCATCAGACTCCACTTTACGCACCCGCTTGGAACC 960754 Query 56590 CTAAAGAACACTATACGACCGATTTTGCGGTTCGTGCTCTGCTTAAACAAAAAGTCGAGA 56649 |||| ||| ||||| || || |||| || | ||||| | ||| || || Sbjct 960753 CTAAGGAAACTTATACCACTGACTTTGGTGTGAAATATTTGCTTGCTC---AAGGCGTGA 960697 Query 56650 A---TAAAAAGATTGTAGTCGGCGTAGCTATGTACGGTCGCGGGTGGACCGGCGTCGGTG 56706 | ||| |||||||| || ||||||||||||||||| ||||| ||||| || || | Sbjct 960696 ACCCTAAGAAGATTGTGGTGGGCGTAGCTATGTACGGACGCGGCTGGACTGGTGTTCATA 960637 Query 56707 ATTTCGTCGACAAAAACAATCCATTTTCCGGCACGGCCAAGGGACCTGTCAAAGGTACCT 56766 ||| || ||| ||||||||||| | |||| || | ||||| ||||||||||| | Sbjct 960636 ATTACGAAGAC---AACAATCCATTCACTGGCAACGCGACTGGACCAGTCAAAGGTACTT 960580 Query 56767 GGGAAGACGGAGTCGTTGATTTTAGAGAAAT-----TTTCAACTCTTTTGTGACTAACAA 56821 || ||||||| || ||||| | ||||| ||| | | | |||| | ||| Sbjct 960579 GGCAAGACGGTGTAGTTGACTATAGAGCAATAGCACATGAGATTGCTTTGGG--TAA--- 960525 Query 56822 ACCGATGG--AT--CGTTACGATGCTATAGCAAAAGCGTCATACGTTTTTAATAATTCGA 56877 |||| || | ||||||| | | || | || | ||||| || | |||| Sbjct 960524 ----ATGGGAATTCCATTACGATAATGTTGCTGAGGCTCCTTACGTGTTCAGGCCATCGA 960469 Query 56878 CAGGTGATCTCATCACTTACGACAGTCCCCAGTCGGTTCTGGATAAAGCAAAGTATGTGT 56937 | ||||| | || || || || | | | | ||| | | || |||| |||||||| Sbjct 960468 CTGGTGACTTAATAACGTATGATAATGCACGATCGACTATTGAGAAAGGCAAGTATGTTA 960409 Query 56938 TAGACTACAACTTGGGTGGGTTGTTTGCGTGGGAAATCGATGCAGATAACGGATTACTTT 56997 | | | || | ||||| || || |||||||| ||||| ||||| || || ||| | Sbjct 960408 GAAAAAATAAGCTTGGTGGTTTATTCGCGTGGGAGATCGACGCAGACAATGGTGAACTAT 960349 Query 56998 TAAACGCAATGAATAGTGGTCTTGG 57022 |||| || ||||| | |||||||| Sbjct 960348 TAAATGCCATGAACATGGGTCTTGG 960324 >seq593 Length=2014934 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||||||||| || || || || |||||| |||| | | ||||| || || ||| Sbjct 755506 GACAAAGAAGGCATTCCCCCAGACCAGCAGAGATTGATCTTTGCTGGCAAACAGCTTGAA 755447 Query 24144 GAT-GACAGA-AACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGT 24201 ||| ||| | | |||| ||||| ||||| || ||||||||||| |||| |||||| Sbjct 755446 GATGGACGCACATTGTCA--GATTACAACATCCAGAAAGAATCTACTCTTCACTTAGTGC 755389 Query 24202 TAAGATTGAGAGGAGGA 24218 | | | ||||||||| Sbjct 755388 TCCGTCTTAGAGGAGGA 755372 >seq3450 Length=502752 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 101022 ACACGGCTTTCATGTTCACGAATTCGGCGACACAAGCAACGGCTGCACGTCTGCGGGCGA 101081 ||| || || ||||| || || || || |||| | |||||||||||||| || |||| Sbjct 192492 ACATGGTTTCCATGTGCATGAGTTTGGTGACAACACAAACGGCTGCACGTCCGCCGGCGC 192433 Query 101082 ACATTTTAACCCTACGG--GCATGGCTCACGGCGCACCCAACTCTGCCGTTCGTCACGTC 101139 ||| || ||||| | || ||| || |||||||| |||| | | |||| || || ||| Sbjct 192432 ACACTTCAACCC-AGGGAAGCA-GGAGCACGGCGCGCCCACCGCCACCGTGCGCCATGTC 192375 Query 101140 GGTGATCTTGGCAATATTGATGC 101162 || ||||| ||||| || || || Sbjct 192374 GGCGATCTCGGCAACATCGAGGC 192352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429915700840470