Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3650 190 2e-43 seq2316 158 1e-33 seq3450 105 6e-18 seq593 105 6e-18 seq802 86.0 6e-12 >seq3650 Length=1334389 Score = 190 bits (210), Expect = 2e-43 Identities = 346/500 (69%), Gaps = 16/500 (3%) Strand=Plus/Minus Query 23643 GCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTCCCGTAGACAAAGTGCCCGTG 23702 || ||||| || || ||||| || || || ||| |||| || || || || || | Sbjct 961510 GCATACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGATCGTGTTCCAATT 961451 Query 23703 CCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGGGAATTAAC 23762 ||||| || | ||||| || ||||||||| | || || ||||| || || || || ||| Sbjct 961450 CCTAACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGAGATGGCATCAAC 961391 Query 23763 GACGCTCTCAAAACCGTGCCG-GGCAGTTTCGAGGCGCTGCAGCGTTCGTGCGCGGGCCG 23821 ||| || |||| | | ||||||||| | || || ||| | |||||| ||||| Sbjct 961390 GACAG-CTTAAAAGAGATCGAAGGCAGTTTCCAAGCTCTTCAGAGATCGTGCAGCGGCCG 961332 Query 23822 CGCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAAGCCGCAGAAGGG 23881 | || ||||| ||||| || |||||||| ||||| ||||||||||| || |||||||| Sbjct 961331 AGAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAAACCACAGAAGGG 961272 Query 23882 AGTGTCGGCGTGGAACGAGCCGTATCGTGGAAACTTTGGTCAGTTGATGGCAACGAAACT 23941 | |||| | |||||||| || || || |||||||| ||| ||||| | |||| Sbjct 961271 ATTGTCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGATGTCTCTCAAACA 961212 Query 23942 GGCGTATCC-GCACTTGAAAGTGCTACCTTCGATCGGTGGCTGGACGCTGTCTGATCCGT 24000 || || | |||| || | |||||||| |||||||| ||||| || | ||||| | Sbjct 961211 AGCCAGGCCTGAACTT-AAGATCCTACCTTCCATCGGTGGTTGGACACTAGCCGATCCCT 961153 Query 24001 -----TTTATCACATGC-ACGAGCCCAGCGTACGCCGTGTGTTTATCGACTCTGTCGAAG 24054 || |||| | | ||| || | ||| || | || ||||| ||| Sbjct 961152 TCTTCTTCTTCACCGACAAGGAGAAGAGAGATCGC------TTCGTTGATTCTGTAAAAG 961099 Query 24055 AGTTTTTGTTAACGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTCCCCGGCG 24114 | || | || || ||||| ||||| || || || ||||| |||||||| ||||| || | Sbjct 961098 ATTTCCTCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGAG 961039 Query 24115 GCAAAGGGGCAAATCCCAAC 24134 | || || || || ||| || Sbjct 961038 GTAAGGGAGCTAACCCCGAC 961019 >seq2316 Length=6356476 Score = 158 bits (174), Expect = 1e-33 Identities = 476/732 (65%), Gaps = 5/732 (1%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 || || || ||||| || || || | ||| ||||| | || | ||| || || || Sbjct 2965542 TGGTTAACAACCTGGAATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTAAAT 2965601 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 |||||||| || || || || |||| |||||| || || | || || ||||| || Sbjct 2965602 GGTTCAAAGGATTCATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCT 2965661 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | || | ||||||||||| || || || || | ||| |||| | ||| ||| Sbjct 2965662 AATAAAAGCGAATTGCGCAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCC 2965721 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 || || || || | ||||||||||| || ||||||||||| | ||| || || Sbjct 2965722 CAGAGATCAGATGGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGA 2965781 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGA 145354 || |||| | | | ||| ||| || ||| || || |||||||| || || | Sbjct 2965782 CTTCCTTCATATGTACTATAAACTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAAT 2965841 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 || ||| |||| || || ||| ||||| ||| || || || | || || || Sbjct 2965842 GCTCCGTAATATATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTCA 2965901 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 || || ||||||| ||| ||||| | ||| || | ||| || | ||| | || || || Sbjct 2965902 TAAGGAATGCGCATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGT 2965961 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATAGGATATCGATTACGGTCGATAAT 145533 | || ||||||| || || | || | | || || |||| || ||||| Sbjct 2965962 CTGTGGCGCATGTTG-GAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAAT 2966020 Query 145534 TTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCG 145593 |||||| | |||| | | || |||||| | | | ||||||| ||||| | Sbjct 2966021 TTTATTAAGGTTTTGTGTGATTATCTTTGTGACTTCTCTCAACTTTGTAAAGTTGTA--- 2966077 Query 145594 AGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 | | || | ||| | || || | || || || || ||||||||||| || Sbjct 2966078 TGTTTTATCTTCATTAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCAAC 2966137 Query 145654 CTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCC 145713 || || || |||||| || || || | ||||||||| || ||||| ||||| || Sbjct 2966138 TTCATCTGCTGAAGTGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTGCC 2966197 Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773 ||||||| ||||| ||||| ||||| || | || || || | ||| || ||| ||| Sbjct 2966198 AAGATTTTTTTGATTGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTGCC 2966257 Query 145774 AGTCTCCACCTG 145785 || ||||| || Sbjct 2966258 TGTTTCCACTTG 2966269 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| | || ||| || || | || || ||||| || |||||||| ||| | Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 2659512 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| ||| ||||| ||| |||| || | ||||| || || || Sbjct 2659511 AATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGGA 2659452 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| |||||| || | | || | ||| || | || || | Sbjct 2659451 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAACC 2659392 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||||||| || || ||||||||||| |||||||| Sbjct 2659391 TCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq3450 Length=502752 Score = 105 bits (116), Expect = 6e-18 Identities = 111/144 (77%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 51800 TGGCCTCTATGTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTGGT 51859 ||||||| ||||||||||||||||| || || ||| ||| || | |||| |||||||| | Sbjct 192350 TGGCCTCGATGTTGCCGAGATCGCCGACATGGCGCACGGTGGCGGTGGGCGCGCCGTGCT 192409 Query 51860 GTT--TGCCAAGGGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGCC 51917 | | || ||| || ||||| |||||||||||||||| ||||| || |||| || Sbjct 192410 CCTGCTTCCCTGGG--TTGAAGTGTGCGCCGGCGGACGTGCAGCCGTTTGTGTTGTCACC 192467 Query 51918 GAACTCGTGCACGTGAAAGCCGTG 51941 ||||| ||||| || || || || Sbjct 192468 AAACTCATGCACATGGAAACCATG 192491 >seq593 Length=2014934 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || || || | || || |||||||| |||||||| || Sbjct 754917 CCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAA 754976 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||||||||| ||||| || |||| || | ||||||||| || ||| Sbjct 754977 AGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 755036 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||| || |||| | ||| | ||||| | | || | Sbjct 755037 ATACCTTCTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACC 755096 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || || || | ||| || |||||||| |||||| || Sbjct 755097 TCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCATGCCT 755147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || |||||||| | ||| || |||||||| ||||| || ||| | Sbjct 755601 CCACCACGGAGACGGAGTACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGAC 755660 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | ||| || || ||| |||| | |||||||||||| || || Sbjct 755661 AATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGA 755720 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || || | | ||| | Sbjct 755721 ATGCCCTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACC 755780 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | || || || ||||||||||| Sbjct 755781 TCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCAT 755827 >seq802 Length=1346568 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 131112 CTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAG 131170 ||||||||| ||||||||||| |||||||| ||| ||| ||| |||| | || | | Sbjct 833169 CTGCTGGTCTGGAGGGATTCCCTCTTTGTC-TTGAATTTTTGCTTTGACATTTTCAATGG 833227 Query 131171 TATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230 |||| | || || | |||| ||| | |||||| || || || ||||| |||||||||| Sbjct 833228 TATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATCT 833287 Query 131231 GCAT 131234 |||| Sbjct 833288 GCAT 833291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471989942780160