Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3650 277 1e-69 seq593 107 2e-18 seq1964 84.2 2e-11 seq2316 82.4 6e-11 >seq3650 Length=1334389 Score = 277 bits (306), Expect = 1e-69 Identities = 652/968 (67%), Gaps = 25/968 (3%) Strand=Plus/Plus Query 96047 ATAATCAACAACGCCATCTTCCCAAGTGCCCGAAACGGGCCCGTTACTACTTCCCAAAAA 96106 ||| ||||| || || |||| |||||| || || || || | | || ||| | Sbjct 960557 ATAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGT-CGCGTTGCCAGTGA 960615 Query 96107 ATAG-TTATCGTTTTCGTAATT-TGACACTCCAGTCCAGCCGCGACCGTACATGGCCACG 96164 || | || | || ||||||||| ||| || |||||||||||||| |||||||| || ||| Sbjct 960616 ATGGATTGTTGTCTTCGTAATTATGA-ACACCAGTCCAGCCGCGTCCGTACATAGCTACG 960674 Query 96165 CCCACAATAATTTTGCGCGGGTCCACGCCTTGATTTGTGAGCAA---TTTAACGGCATGG 96221 ||||| | ||| || |||| |||||||||| | ||||| ||| || || | Sbjct 960675 CCCACCACAATCTTCTTAGGGTTCACGCCTTGA---GCAAGCAAATATTTCACACCAAAG 960731 Query 96222 TCCGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCC 96281 || ||| | || || || ||||||||| || ||||| |||| ||| || | || Sbjct 960732 TCAGTGGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGATGACCG 960791 Query 96282 AAATCAATGTTTGACCACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGG 96341 | ||| ||||| |||||||||||||| || ||||| || || || | ||| | Sbjct 960792 AGGGTGTCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCATA 960851 Query 96342 AACTTTTGCGCAACGTCGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCA 96401 ||||||| || | ||| | || || || || || || |||||||| || Sbjct 960852 TACTTTTGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCG 960911 Query 96402 CTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGCAAC-TCGTCTAACATCACGCGCAA 96460 |||| |||||| | || || || | | | || |||| ||||| | ||||| Sbjct 960912 GAGGTCAGCTCGTATTTCTTACCGGTCT-CTTCAGAAAGGTCGTTCAACATTTCACGCAA 960970 Query 96461 TTCCTTTAATAGAATGTTGTACGTGTCAGCGTCGCGCTCTTT---GTTGCCGAGCGTCGG 96517 |||||| | || || |||| | | || | ||||| | | ||||| ||||| Sbjct 960971 TTCCTTCATTAA----TTCAACGTA--AACATCTCCGTCTTTCGGGCTACCGAG-GTCGG 961023 Query 96518 G-TTGGCGCCTTTACCGCCCGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCC 96576 | || || || ||||| || || |||||||| |||||||| || || ||||| || |||| Sbjct 961024 GGTTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCC 961083 Query 96577 AAACCTGCAAAAATTCTCTGACGGAGTCTACAAACACGCGCCGTTTT-TCCGCGTCGTGC 96635 | | | || ||| | || || || || || || | | || ||| |||| Sbjct 961084 AGGTCAAGAGGAAATCTTTTACAGAATCAACGAAG-CGATCTCTCTTCTCCTTGTCGGTG 961142 Query 96636 ATGTAATAGAACGGGTCGGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGT 96695 | | | |||| || |||| |||||||| || ||||| || || || || ||||| | Sbjct 961143 AAGAAGAAGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTTCA 961202 Query 96696 GGATTAGCCAGTTTGGCCGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAA 96755 || | || ||||| | ||||| ||| ||||||||||||||||| || |||||||| Sbjct 961203 GGCCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCAG 961262 Query 96756 GCAGACACGCCCTTTTGCGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTA 96815 | ||||| ||||| || ||||| || | ||||||||||| |||||||||| ||||| Sbjct 961263 GAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTTG 961322 Query 96816 AAATCTGAACGGCCCTGGCAAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTA 96875 |||||| ||||| ||| || | || || |||| ||||| || || ||| Sbjct 961323 AAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCTTTT 961382 Query 96876 AGGGCATCGTTAAGGCCGTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGAC 96935 | | ||||| | ||| || || || ||||| || || || ||||| | ||||| | | Sbjct 961383 AAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGTC 961442 Query 96936 AAGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACA 96995 | ||| || | || || || || || || || | ||||| |||||||| || Sbjct 961443 AGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTACG 961502 Query 96996 AAATACGC 97003 || || || Sbjct 961503 AAGTATGC 961510 >seq593 Length=2014934 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 12/223 (5%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | |||||| ||||| |||||||| ||||| ||||||| || || |||||| Sbjct 755616 AGTACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGACAATGT----GCGTCC 755671 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 ||||| ||||| || || | || || ||||| ||||| || | |||||| || Sbjct 755672 ATCTTCCAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTT 755731 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || ||||| ||| || | | | ||||| |||||| |||| |||| Sbjct 755732 GTCTTGGATCTTTGC--CTTAACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTG 755789 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 ||||| || || |||| || || |||||||||||||| |||| Sbjct 755790 ATGGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCATCTTGT 755832 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| || ||||| || |||||||| || |||||||| | Sbjct 755145 CCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAA 755204 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || || | || || |||||| | ||||| || || || || || Sbjct 755205 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 755264 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||||| | || || | | | ||||| |||||| Sbjct 755265 ATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACC 755324 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||| || ||||| || |||||||| ||||||||||||||| Sbjct 755325 TCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCATT 755372 >seq1964 Length=1360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || ||||||||||||| | || | ||| Sbjct 259 AGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACCATCC 200 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| || ||||| ||| | || || || || ||||| ||| | || || ||||| Sbjct 199 TCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 140 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| ||| || ||| | |||||| | Sbjct 139 TGGATCTTGGC--CTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTG 82 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| || ||||| || |||||||| Sbjct 81 TTTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 48 >seq2316 Length=6356476 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| ||||||| |||| || || || || ||||| || ||||||||||||| | Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 2659512 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || || || |||||||| || | || | || || || || || Sbjct 2659511 AATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGGA 2659452 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||||||| ||||| | || || | | | |||||| || || Sbjct 2659451 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAACC 2659392 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | || |||||||| || || || ||||| || || ||||||||| Sbjct 2659391 TCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 2659344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405068874023260