Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2316 138 8e-28 seq1 136 3e-27 seq1964 102 5e-17 seq593 100 2e-16 >seq2316 Length=6356476 Score = 138 bits (152), Expect = 8e-28 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 38084 ATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTA 38143 ||||||||| |||| || | ||||||||| ||||| || ||||| || || ||||| Sbjct 2659578 ATCATTACCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTA 2659519 Query 38144 ATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATC 38203 || ||||| |||| | || ||||| ||||| ||||| || || | | ||| ||||| Sbjct 2659518 GTCGGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATC 2659459 Query 38204 GGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACT 38263 | ||| | ||| |||||||| |||||| || ||||| | | ||| || Sbjct 2659458 TGGGGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGC 2659399 Query 38264 TTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| ||||| || || ||||||||||| | |||||| ||||| |||||||| Sbjct 2659398 TTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq1 Length=1179362 Score = 136 bits (150), Expect = 3e-27 Identities = 86/93 (92%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 11419 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 11478 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| |||||||||||||||||||||||||| Sbjct 11479 TAATCCATTCATGCGCGTCACTAATTAGATGAC 11511 >seq1964 Length=1360 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||||||||||||||| |||||| || || ||||| || || | ||| | Sbjct 263 ACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACC 204 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || || || || |||||||| || || ||||| || || | |||| ||||| || Sbjct 203 ATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTT 144 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| || || ||| ||||||| || || || ||||||||||| || || Sbjct 143 GTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGAT 84 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || |||| || || ||||| |||||||| Sbjct 83 TGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 48 >seq593 Length=2014934 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| | ||| | ||| || |||||||| || || || || ||||||| Sbjct 755369 CATT-CCTCCTCTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAAT 755427 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | ||||| ||| | || || | ||||| || ||||| || | | || || || | Sbjct 755428 CTGACAATGTGCGTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTG 755487 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | |||||||||||| ||||| ||| ||||| | | || || | Sbjct 755488 GGGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCT 755547 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| |||||||| ||||| || || |||||||| || ||||| |||||||| Sbjct 755548 CAACCTCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 Score = 86.0 bits (94), Expect = 4e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187 ||||||| || ||||| ||||| | ||| | || |||| ||||| || ||||| | Sbjct 754726 CCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGA 754785 Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | | | || || || | ||||| ||||| ||||| || || ||| ||||||| Sbjct 754786 TCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCT 754845 Query 38248 GGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA 38307 || || || ||| ||||||||||| ||||| || || |||| |||||| || | Sbjct 754846 CGATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTTAACAA 754905 Query 38308 ATATCTGCAT 38317 | |||||||| Sbjct 754906 AGATCTGCAT 754915 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| ||||| | ||||| ||||| || ||||||||||||||||| || || Sbjct 755145 CCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAA 755204 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || ||||| ||||| | ||| Sbjct 755205 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 755264 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || ||||| |||||| || ||||||| | || ||| || || Sbjct 755265 ATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACC 755324 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||| ||||| || || || | ||||| || || |||||||| Sbjct 755325 TCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334931385677294