Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2316 517 1e-141 seq348 116 5e-21 >seq2316 Length=6356476 Score = 517 bits (572), Expect = 1e-141 Identities = 1197/1790 (67%), Gaps = 32/1790 (2%) Strand=Plus/Plus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||| | ||||| ||||| | | | || || || |||||| ||| |||||||| Sbjct 2965197 TTGTCAACCGTGAACTGAATAGCATTAGCAGCAGGCTTTATACGTAAATAATACATTCCT 2965256 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| | ||| | ||||| ||||||| || || || | ||| |||| |||| Sbjct 2965257 GTTTTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTTTCCATAATTCGGT 2965316 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || || | ||| || || | |||||||||||| || || || || || | || |||||| Sbjct 2965317 TCAGCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGCC 2965376 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62079 ||||| || | || || | ||| ||||||| |||||||| || || || ||| || Sbjct 2965377 ATTTTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCT-AATGTC 2965435 Query 62080 TTCTGGAAG--GTTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62136 | ||| | | | | |||| |||||||| ||| | || ||| ||| || || Sbjct 2965436 CTTTGGTATACGCTCGATATTTTGAATGGAACCATTGTTGTGAATTATCAGATTTTTCAT 2965495 Query 62137 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62196 || || | |||||| | | || || || ||| | | ||| | ||||| || || Sbjct 2965496 GTCGTCGTCCCATAAATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTAACAACCTG 2965555 Query 62197 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 62256 ||||| |||||||| || | | |||||| || ||| | ||||| | || || Sbjct 2965556 GAATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAGGATTC 2965615 Query 62257 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62316 ||| |||||||| ||||| || || || || || ||||| || || | || | ||| Sbjct 2965616 ATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGCGAATT 2965675 Query 62317 TCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62374 | || || ||||| | ||||| ||||||| | ||| | ||| ||||| || Sbjct 2965676 GCGCAGCCC--ATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCAGAT 2965733 Query 62375 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62433 || ||| | ||| || | || || | || |||| |||| Sbjct 2965734 GGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACT-TCCTTCATA 2965792 Query 62434 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62493 |||| || |||||| | | || ||||| ||||| || |||||||| |||||||| Sbjct 2965793 TGTACTATAAACTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAATA 2965852 Query 62494 AATGGTTTCGAAGATCTTCTTATTTAGATC--TTGCGCTTCCAGGCTATCAAATGGATAA 62551 || ||||||||||| | | || || | |||| | || || ||| | ||| Sbjct 2965853 TATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCA--CTTTCATAAGGAATG 2965910 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | |||| ||| | || ||||| ||||| || ||||| || || ||||| || | | Sbjct 2965911 CGCATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGC 2965970 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 | || || | | |||||||| | || ||| |||||| ||| ||||||||||| || Sbjct 2965971 ATGTTGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGG 2966030 Query 62672 TTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT-- 62728 ||| |||| ||||| || || ||| || ||| | || |||| Sbjct 2966031 TTTTGTGTGATTATCTTTGTG-ACTTCTCTCAACTTTGTAAAGTTGTATGTTTTATCTTC 2966089 Query 62729 ATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 62787 |||| ||||| ||||||| |||| ||| || | ||||||||| || || |||| || Sbjct 2966090 ATTAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGA 2966149 Query 62788 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 62847 | |||| | || || ||||| | |||||| || || ||||| || | ||||| ||| Sbjct 2966150 AGTGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTG 2966209 Query 62848 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 62907 ||| || ||| ||||||| | ||| ||||| | || |||| || || ||||| | || Sbjct 2966210 ATTGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTG 2966269 Query 62908 AGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTATCTC 62962 | |||||| || |||||||| | || |||| ||| ||| | ||||| Sbjct 2966270 TGCTTCTATGATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAA-----ATCTC 2966324 Query 62963 TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT 63022 ||||| ||| ||| | ||| ||| ||| || || ||||||||| | | | || Sbjct 2966325 TTTTCCTCTTCATATTGCCCATATAATGCTTCAAATTCTTCTCCCCAACAGTCGGCAAGA 2966384 Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63082 || || || |||| || ||||| || |||| | | || | | || || |||||| Sbjct 2966385 CCGGGGCAATCATGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGCTTCATA 2966444 Query 63083 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63142 || | ||| || ||||| | || |||||| ||||||| ||| ||| || || || Sbjct 2966445 AACAAATCTGGGATCCATAATGCATAAAATAGTTCTCTGGCTCTGACTTCTTCTTTGCCA 2966504 Query 63143 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63202 ||||||||||| ||||| | ||| | | | |||||| ||||| ||||| ||||| || Sbjct 2966505 GTATTCTTTTTCAGATCTAAAAACTCAAACACATCAGAGTGCCAGGGTTCTAAGTAAATA 2966564 Query 63203 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63262 || | | || || |||||||| ||||| || || | || || || || ||||| || Sbjct 2966565 GCAAATGCACCTGGTCGTTTGTTGCCTCCTTGGTCAACATACCTTGCTGTATTATTGTAC 2966624 Query 63263 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCA 63322 |||| ||||||||| | || |||||||||| ||| || || |||| ||||| | || Sbjct 2966625 ACTCGCAACATTGGTACAAGACCATTGGATACACCGTTAGTACCTGCTATATAAGTACCT 2966684 Query 63323 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63382 | || | |||| | || ||| || || || || || ||| ||||||||||| Sbjct 2966685 TTTGCTCTAATACAATGAACATGTAGTCCAATGCCACCAGCTGATTTTGAGATTAATGCA 2966744 Query 63383 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAA 63441 ||| |||||| || ||||| || || || || || ||||| |||| | || | || || Sbjct 2966745 CATTGTTTTAGTGTGTCATATATACCTTCAATGCTGTCATCTTTCATAGCTATG-AGGAA 2966803 Query 63442 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGT 63501 || ||||| ||| | | |||| | ||| ||||| || ||| || || || Sbjct 2966804 GCAAGAAGACAATTGTGGTCTCGGAGTTGCTGCAGAGAATAATGTGGGACTGGCATGTGT 2966863 Query 63502 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63561 ||| |||||||||| | || ||||| || ||||| ||||| || || || ||| Sbjct 2966864 AAAGTATTTTTCAGACAATAAGTTGTAGGTTTCAATGGCTGAATCAATGTCTTCACCATG 2966923 Query 63562 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63611 ||||| | || ||| ||||| | ||| ||||| ||||||||| | |||| Sbjct 2966924 GATTCCAATTGAGACCCGCATCAGCATATGCTGGGGTCTTTCAGCAATCT 2966973 Score = 104 bits (114), Expect = 3e-17 Identities = 125/169 (74%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 63814 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 63873 |||| |||| || ||||||||||||| ||| |||| |||| |||||| ||||| | || Sbjct 2967855 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTAGCAGCTAGTACAGC 2967913 Query 63874 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 63933 ||||| ||||| | ||| || |||||| || |||| || || | | |||||||||| Sbjct 2967914 GTAATCTGGATGATCTGTTGTCATAGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTC 2967973 Query 63934 TACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATT 63982 || |||||||| || || || || ||| || |||| || |||| Sbjct 2967974 CACAGTTGTTACTCCCGAGTAAATGCCACTGATGACTTTCAAAGTTATT 2968022 >seq348 Length=4065129 Score = 116 bits (128), Expect = 5e-21 Identities = 145/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 32911 TTTCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAAT 32968 |||| ||| ||| | | ||| ||||| |||| || || |||||| || || || | Sbjct 3297255 TTTCTTTAGGGTCTCTGATATAAGTATCTATCAGCAATGA--ATACATCTCAGAGTGTAC 3297198 Query 32969 GTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGT 33028 || || || || ||||| |||||||| ||| | || || || ||| || |||||| Sbjct 3297197 ATTCTCCATAGCAATTTGGAATCCGTAAAAGAACCTTGCTTCACCAATTTGAACTTCTTG 3297138 Query 33029 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33088 ||||||| ||| | | ||||||||| || || || || ||| |||||||||||||| Sbjct 3297137 TGAAAATCGCTCTACCAGATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAA 3297078 Query 33089 TACATGTTTTATAAAAT 33105 |||||||||||||||| Sbjct 3297077 GACATGTTTTATAAAAT 3297061 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || |||| ||| ||||| ||||||||||| ||||| || ||||||||||| ||||| | | Sbjct 3296936 TTGGATAGATCAACTTCCTCCACTGTCCAGAATGAAGCTTCTGCCTTTTTGTACATTTGC 3296877 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 ||||| ||| ||||||| || || || || || || Sbjct 3296876 CAGATATCAGGATATTGGATGGGGAAGATGACGAA 3296842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633601316370400