Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3650 329 3e-85 seq593 138 1e-27 seq2316 129 5e-25 seq359 120 3e-22 seq1964 104 2e-17 >seq3650 Length=1334389 Score = 329 bits (364), Expect = 3e-85 Identities = 665/980 (68%), Gaps = 24/980 (2%) Strand=Plus/Plus Query 57192 TTGCT-TGTAATCAACCACGCCTTCCTCCCACGTGCCGTGCACAGGCCCACTTCCTTTAC 57250 ||||| | || ||||| || || || | ||| || || | || || ||| | | || | Sbjct 960550 TTGCTCTATAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGC 960609 Query 57251 CCGTGAACGGATTGTTGTCCGTGTAGTCGTGCACACCCGTCCATCCTCGACCGTACATGG 57310 | ||||| ||||||||||| ||| | || ||||| ||||| || || |||||||| | Sbjct 960610 CAGTGAATGGATTGTTGTCTTCGTAATTATGAACACCAGTCCAGCCGCGTCCGTACATAG 960669 Query 57311 CCACGCCAACCACTATTTTGTCAGCGGACACGTTCTGCGCTAACAAAGTGCGTACAGCAT 57370 | ||||| ||||| || || | || | |||| || || | |||| ||| || Sbjct 960670 CTACGCCCACCACAATCTTCTTAGGGTTCACGCCTTGAGCAAGCAAATATTTCACACCAA 960729 Query 57371 TGTCTGTGGTATATGGTTCGCTAGGGTTCCACAGAGGCGCATAAATGTTG-GTTTGATAG 57429 ||| |||||||| | ||| |||||||||| || || |||| || | || |||| | Sbjct 960730 AGTCAGTGGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAA-GTGGAGTCTGAT-G 960787 Query 57430 CCCAAATTTGT-GTTACTCCAGGCACCTTTAAAATCGTACGACATTAAGAATATGCTGTC 57488 || | ||| |||| |||||| ||||||||||| || ||| | ||| || ||| Sbjct 960788 ACCGAGGGTGTCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTC 960847 Query 57489 GAGATATTTTTGCGCATGATTGTAATCGACAAGTTCGATTTTATCATTACCGGCGCCGAT 57548 | ||| ||||| || | | |||||||||||| || ||| ||||| || || | ||| Sbjct 960848 CATATACTTTTGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGAT 960907 Query 57549 GGCTGTTGTGAGCAATAGTTTACGATCAGTTTC--CAGTTCCAACTCGTCCAACATTAAT 57606 || | || ||| ||| | | || || ||| | |||| ||||||| Sbjct 960908 AGCGGAGGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAA--AGGTCGTTCAACATTTCA 960965 Query 57607 CTCAAATCTTTCAATAGCCGCACGTATGTTTCTCCGTC------GCGACCAGGGTCGCCC 57660 | ||| || |||| || ||||| |||||||| || ||| ||||| Sbjct 960966 CGCAATTCCTTCATTAATTCAACGTAAACATCTCCGTCTTTCGGGCTACCGAGGTCG--- 961022 Query 57661 AACAAAGGATTAGCACCATTACCACCAGGAAATTCCCAATCAATGTCGACTCCATCAAAA 57720 || ||||| || ||||| ||||| ||||||||||| ||||| || ||||| || Sbjct 961023 ------GGGTTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAG 961076 Query 57721 AATTTCCACACTTTGATGTAGTCGCGCACCGATTGCACAAAAGTGTTGCGAATAGTGTCG 57780 || ||||| || | | || || || | || || | | | | | Sbjct 961077 AACTTCCAGGTCAAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTG 961136 Query 57781 TCGTGCATGAAAAAGAAGGGATCCGATAAGGTCCAACCACCAATGGATGGCAATACTTTT 57840 ||| | ||| ||||||||||| | || ||||||||||| ||||| || | | || Sbjct 961137 TCGGTGAAGAAGAAGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTA 961196 Query 57841 AGATGCGGATATGCTTTTTTGACCGCCATCAGTTGACCAAAATTACCTTTGTAAGGTTCG 57900 || | || |||| ||||| | |||||| || ||||| || ||||||||||||||| Sbjct 961197 AGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCG 961256 Query 57901 TTCCAAGCCGATACTCCTTGTTGAGGCTTTTGTAGCGCCGCCCAAGGATCGTGTATCGTT 57960 ||||| | || | ||| | || || || || || || |||||||||||||| || | | Sbjct 961257 TTCCAGGAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGAT 961316 Query 57961 ACTTTGAAATCTTCTCGGCCTGCACACGAACGTTGCAACGCTTCAAAACTACCTGTAATC 58020 |||||||||||||||||||| ||||| | || | |||| ||||| ||| ||| Sbjct 961317 ACTTTGAAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATC 961376 Query 58021 GTCTTTAGACTGTCGTTGATGCCATCGCCTCCGCAAATAGGCACGAAACCGTACAACAAA 58080 |||| ||||||||||||||||| || |||||||| || | ||| ||||| | ||| Sbjct 961377 TCTTTTAAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAA 961436 Query 58081 TGAGTCAAATTGGGTACGGGTACTTTATCAACTGGATATTTACGACCGTACACACTCCAC 58140 ||||||| || || | || || ||| ||||| |||| | |||||||| ||| Sbjct 961437 TGAGTCAGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCAT 961496 Query 58141 TCCACGAAATAAGCTCCCAC 58160 || ||||| || ||||| || Sbjct 961497 TCTACGAAGTATGCTCCAAC 961516 >seq593 Length=2014934 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || | |||||| | || || ||| | ||| Sbjct 755599 ATGCAGATCTTCGTTAAGACCTTGACAGGCAAGACTATCACATTAGAGGTTGAGCCATCT 755540 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||||||||| ||||| || ||||| Sbjct 755539 GACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 755480 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||| |||||||| | ||||||| ||||| || |||||||| Sbjct 755479 CAGAGATTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACATTGTCAGATTACAAC 755420 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || |||||||| || || || |||||||| | || |||||||||| Sbjct 755419 ATCCAGAAAGAATCTACTCTTCACTTAGTGCTCCGTCTTAGAGGAGGAA 755371 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || | || || || | |||||| | || |||||| | || Sbjct 755372 AATGCAGATTTTTGTTAAAACGCTAACAGGAAAGACTATCACACTGGAGGTGGAGCCATC 755313 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || ||| | || |||| |||| ||| ||||| || || ||||| || || Sbjct 755312 AGACACAATTGAG--AATGTAAAAGCGAAAATTCAA-GACAAGGAGGGCATTCCCCCAGA 755256 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || |||| ||||| || || || | ||||||| |||||| | || || Sbjct 755255 TCAGCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCAGACTA 755196 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||| ||||| ||||| || || || || | |||||||||| Sbjct 755195 CAATATTCAAAAGGAATCGACGCTTCACTTGGTTCTTCGTTTAAGAGGAGG 755145 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || ||||||| | || || || | ||| Sbjct 755143 ATGCAAATTTTCGTGAAGACTTTGACAGGCAAGACCATCACCTTGGAGGTTGAACCTTCT 755084 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| || ||| || |||||||| || || || ||| Sbjct 755083 GATACCATTGAG--AATGTCAAAGC-CAAGATCCAGGATAAAGAAGGTATCCCCCCAGAC 755027 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||| |||||||| |||| |||| || || | || ||| Sbjct 755026 CAGCAGAGATTGATCTTTGCTGGCAAACAGCTAGAGGATGGCCGTACCCTTTCTGACTAC 754967 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || || || || || || Sbjct 754966 AACATCCAAAAGGAATCAACACTTCACTTGGTACT 754932 >seq2316 Length=6356476 Score = 129 bits (142), Expect = 5e-25 Identities = 175/241 (73%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||||||||| || || ||||| || | || |||||| |||| || | || || || | Sbjct 2659341 AACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGC 2659400 Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||||||||||| || | || |||| |||| ||| |||||||| || ||||| || Sbjct 2659401 CTCTGACACTATTGAA--AATGTAAAAGCGAAAATTCAA-GACAAAGAGGGCATTCCCCC 2659457 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || || || | || || ||||||||||| |||||||||| || || || ||| Sbjct 2659458 AGATCAGCAAAGGTTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCCGA 2659517 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||||| || || || ||||| || || || || ||| | ||||| ||||||| ||| | Sbjct 2659518 CTACAACATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTGCGAGGAGGTAATGA 2659577 Query 25232 T 25232 | Sbjct 2659578 T 2659578 >seq359 Length=3483218 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 51090 ACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGC 51149 |||| |||| ||||| || |||||| | |||||||||||| || | |||| || Sbjct 2603630 ACCCGCATATCCATTAGGGTCTATACCATCTATGCTGTAATGATCATTCAAGTATATTGC 2603571 Query 51150 ATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACAT 51209 ||| | ||| |||| ||| || |||||||| | ||| |||||| |||||||||| Sbjct 2603570 ATATTTAAGTGCATCTTCTGGACTTGGTGTCCATTCTAGAATCTTCTTGCCCCAGTACAT 2603511 Query 51210 GCGCATGTAACCGTGCATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAA 51269 |||||| | || ||||||||||| || ||||||| ||| || ||||||||||| Sbjct 2603510 TCGCATGAAGCCATGCATCTTGCCTTCTTTGACAAGCTGCAGTTGTGCAGAGTTCCACAA 2603451 Query 51270 TTCGTCGTGAGTTT 51283 ||| || || |||| Sbjct 2603450 TTCATCATGGGTTT 2603437 Score = 109 bits (120), Expect = 5e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 51103 TTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCC 51162 |||||||| | ||||| | |||||||||||| || | | |||| ||||| | || Sbjct 2607309 TTAGGATCTCTGCCATCTATGCTGTAATGATCATTCAAATATATTGCATATTTAAGCGCA 2607250 Query 51163 ATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCG 51222 |||| ||| ||||||||||| | ||| |||||| ||||||||| || | | || Sbjct 2607249 TCTTCTGGACTCGGCGTCCATTCTAGAATCTTCTTGCACCAGTACATACGAAGAAAGCCA 2607190 Query 51223 TGCATCTTGCCCTC-GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGT 51281 ||||||||||| || ||| |||||| ||| || |||||||||| ||| || ||||| Sbjct 2607189 TGCATCTTGCCTTCTTTGACG-AGCTGCAGTTGTGCAGAGTTCCACAGTTCATCATGAGT 2607131 Query 51282 TT 51283 || Sbjct 2607130 TT 2607129 >seq1964 Length=1360 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| |||| || ||| | ||||| | ||||| || | || Sbjct 48 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAAACAATCACCCTAGAAGTTGAACCCTCG 107 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| || || || ||||| Sbjct 108 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 167 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||| || || || |||| ||| || | ||| ||||| Sbjct 168 CAACGTCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGTCGTACACTCTCCGACTACAAC 227 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||||| ||||| Sbjct 228 ATCCAGAAGGAGTCTACTCTTCATTTGGTGCT 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433307540689310