Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq3650 311 9e-80 >seq3650 Length=1334389 Score = 311 bits (344), Expect = 9e-80 Identities = 593/870 (68%), Gaps = 15/870 (2%) Strand=Plus/Plus Query 51575 CCAGCCGCGAGCGTACATCGCCACGCCGACGACGATCTTCTGATTGCGCACGCCCTGTTC 51634 ||||||||| ||||||| || ||||| || || ||||||| | | |||||| || | Sbjct 960650 CCAGCCGCGTCCGTACATAGCTACGCCCACCACAATCTTCTTAGGGTTCACGCCTTGAGC 960709 Query 51635 GAGAAGCGACGACACGGCATAGTCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGC 51694 || | | ||| || |||| ||||| || |||| | |||||||| ||| || Sbjct 960710 AAGCAAATATTTCACACCAAAGTCAGTGGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGC 960769 Query 51695 GAACAGTGTGGTCTGGTAGCCCAGATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTT 51754 | | |||| ||||| | || || | ||| ||||| || || || ||||| || | Sbjct 960770 GTAAAGTGGAGTCTGATGACCGAGGGTGTCGTTAGACCAGGCGCCTTTAAAATCATAACT 960829 Query 51755 CATGAGGAAAATGTAATCCAACTGCGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTT 51814 ||| ||||| || | |||| | | | || || | ||| ||||| ||||| || || Sbjct 960830 CATAAGGAAGATATGGTCCATATACTTTTGAGCTTCACTGTAATCGACAACTTGGATCTT 960889 Query 51815 ATCGTAGCCCGCGCTGATGGCGCTGGTCAACAGGTACGAACGGTTCGTGGCGG-CGCTCA 51873 ||| | || || ||||| ||| ||||| | ||| ||| | ||| | || Sbjct 960890 ATCCCATCCAGCACTGATAGCGGAGGTCAGCTCGTAT------TTCTTACCGGTCTCTTC 960943 Query 51874 AC-----TCGTCGAGCATGTCGCGCAGCTCGGTCAAAAGCGTCACGTACGTCGCACCATC 51928 | |||| | ||| || |||| || ||| | ||||| | || || Sbjct 960944 AGAAAGGTCGTTCAACATTTCACGCAATTCCTTCATTAATTCAACGTAAACATCTCCGTC 961003 Query 51929 GCGATCGGGATCGCCCAGGTCGGGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGAC 51988 ||||| | || |||||||| || || || || || || || || ||||| |||| Sbjct 961004 TT--TCGGGCTA-CCGAGGTCGGGGTTAGCTCCCTTACCTCCAGGGAATTCCCAATCGAT 961060 Query 51989 GTCGACTCCGTCGAAGAACTTCCAAGTCAGCAGAAACTCGCGAACCGATTCGACGAAGGT 52048 ||| || || |||||||||||||| |||| || || || || || || |||||| Sbjct 961061 GTCAACACCATCGAAGAACTTCCAGGTCAAGAGGAAATCTTTTACAGAATCAACGAAGCG 961120 Query 52049 TGCGCGTTTGCTCGCGTCGTGCAGGAAGAAGAACGGATCGGACAGCGTCCAACCGCCGAT 52108 | | || | |||| | ||||||||| ||||||| || |||||||| ||||| Sbjct 961121 ATCTCTCTTCTCCTTGTCGGTGAAGAAGAAGAAGGGATCGGCTAGTGTCCAACCACCGAT 961180 Query 52109 CGAGGGCAGAATCTTGAGCGAAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTT 52168 || || || ||||| || ||| |||| ||||| | ||||||||| |||||||| Sbjct 961181 GGAAGGTAGGATCTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTT 961240 Query 52169 TCCCTTGTACGGATCGTTCCAGGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCA 52228 || ||||| || |||||||||| || | || ||||| |||||||| || || ||||| Sbjct 961241 GCCTTTGTAAGGTTCGTTCCAGGAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCA 961300 Query 52229 GGGATCGTGAATCGTCACCTTAAAGTCCGACCTGCCCACGCACGACCGTTGCAACGCTTC 52288 ||||||||||| | || || || || | ||| |||||| | || | |||| Sbjct 961301 AGGATCGTGAATAGATACTTTGAAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTG 961360 Query 52289 GAAACTGTTGTCGATCGGTTTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAAT 52348 ||||||| |||||| ||| | ||||||||||||||| || || ||||| || ||||| Sbjct 961361 GAAACTGCCTTCGATCTCTTTTAAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAAT 961420 Query 52349 GAAGCCGTACAGCAGATGCGACAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCG 52408 ||||||||| || | ||| | |||||| || | || || |||| || || || || | Sbjct 961421 GAAGCCGTATAGTAAATGAGTCAGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCT 961480 Query 52409 CAAGTAAACGCCCCATTCGACAAAGTAGGC 52438 | ||| || |||||||| || ||||| || Sbjct 961481 CGGGTACACACCCCATTCTACGAAGTATGC 961510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537577166565040