Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq348 196 5e-45 seq303 141 1e-28 seq1317 134 2e-26 >seq348 Length=4065129 Score = 196 bits (216), Expect = 5e-45 Identities = 180/225 (80%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 93356 TCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCA 93415 |||| || || ||||| || | || |||||||| ||||| || ||||||||||| ||| Sbjct 3297244 TCTCTGATATAAGTATCTATCAGCAATGAATACATCTCAGAGTGTACATTCTCCATAGCA 3297185 Query 93416 ATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCT 93475 |||||||||||||| || | || ||||| || || |||||||| ||||||| |||| Sbjct 3297184 ATTTGGAATCCGTAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGCTCT 3297125 Query 93476 ACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATA 93535 || ||||||||||| || ||||||||||| || |||||||| ||||| | ||| |||||| Sbjct 3297124 ACCAGATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAAGACATGTTTTATA 3297065 Query 93536 AAATGTTTCTCATCAT-CTTTAAGCTTATCCCAATCGGATAGATC 93579 ||||| ||||| | |||||| ||| |||||||| |||| ||| Sbjct 3297064 AAATGCCTCTCACAGTCCTTTAAACTT-TCCCAATCTGATAAATC 3297021 Score = 145 bits (160), Expect = 8e-30 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 93125 GATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAAT 93184 || |||| ||||||||||| || ||||| || | || || || ||||| | ||| ||| Sbjct 3297622 GAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCTTCAACCAGAAT 3297563 Query 93185 ATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGT 93244 ||||| |||||||| || ||||| || || ||||| || || |||||||| || || | Sbjct 3297562 ATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATGCAACTATCCTC 3297503 Query 93245 TCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTA 93304 || |||| ||||| | || ||| |||||||| ||| ||||| || || ||||| || Sbjct 3297502 TCTCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTCTGCCTTTTTTTTC 3297443 Query 93305 ATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 | |||||||| || || || || || || | | |||||| Sbjct 3297442 ACACAAGGTAAAGTCTCAATGGCATTGAACAAGAAATCTC 3297403 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || ||||| ||||| || || ||||| || || |||||||| ||||||||||| | | Sbjct 3296936 TTGGATAGATCAACTTCCTCCACTGTCCAGAATGAAGCTTCTGCCTTTTTGTACATTTGC 3296877 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 || || || ||||||| || || || ||||| ||||| Sbjct 3296876 CAGATATCAGGATATTGGATGGGGAAGATGACGAAACG 3296839 >seq303 Length=4096874 Score = 141 bits (156), Expect = 1e-28 Identities = 89/95 (94%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 475585 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGATGGGAGC 475644 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||||||||||||| ||||||| Sbjct 475645 GTGGGTTCGAACCCCACACCTGACAAAATATTATT 475679 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 481297 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGTTGGGAGC 481238 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||| || Sbjct 481237 GTGGGTTCGAACCCCACACCTGACAGAT 481210 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| Sbjct 470357 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGTTGGGAGCG 470416 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||||| || Sbjct 470417 TGGGTTCGAACCCCACACCTGACAGAT 470443 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 932499 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 932440 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 932439 TGGGTTCGAACCCCACACCTGACAA 932415 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 934409 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 934468 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 934469 GTGGGTTCGAACCCCACACCTGACA 934493 >seq1317 Length=3684703 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 3355172 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGTTGGGAGC 3355231 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||| || Sbjct 3355232 GTGGGTTCGAACCCCACACCTGACAGAT 3355259 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 3365712 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGATGGGAGC 3365653 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||||||||| Sbjct 3365652 GTGGGTTCGAACCCCACACCTGACAAAT 3365625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556833834015760