Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3650 190 1e-43 seq593 87.8 1e-12 >seq3650 Length=1334389 Score = 190 bits (210), Expect = 1e-43 Identities = 547/825 (66%), Gaps = 36/825 (4%) Strand=Plus/Plus Query 84011 GTTTGACCAAGCACCTTTAAAATCATAATTCATTAAAAATATTTTTCCTAAAGACTTTTG 84070 ||| ||||| || ||||||||||||||| |||| | || || | | | | ||||||| Sbjct 960800 GTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCATATACTTTTG 960859 Query 84071 CGCCTCGTCATAGTTTACCACGGCAATCTTGTCGTAACCCGCACTAATAGCGCTTGTTAA 84130 || || || | || || ||||| || | || ||||| |||||| || | Sbjct 960860 AGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCGGAGGTCAG 960919 Query 84131 TTCGTAAACCCTGCCAGTTTGCGATTCT---AGCTCGTCTAACATTGCGCGCAGTTCCTC 84187 ||||| | | || || | ||| || |||| |||||| | |||| ||||| Sbjct 960920 CTCGTATTTCTTACCGGTCTC---TTCAGAAAGGTCGTTCAACATTTCACGCAATTCCTT 960976 Query 84188 TAATATTAAAATGTATGTTTTGGCGTCACGTTCAGCATCCCCCAACGACGGG-TTGGCTC 84246 | || | || ||| | |||| ||| | | || | | |||| || |||| Sbjct 960977 CATTAATTCAACGTAAACATCTCCGTCT--TTCGGGCTACCG--AGGTCGGGGTTAGCTC 961032 Query 84247 CTTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTCCATACTTGTA 84306 | || ||||| || ||||||||||||||||| ||||| ||||| || ||||| || Sbjct 961033 CCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAG----GTC 961088 Query 84307 AA----AACTCCTTAACCGAATTTACAAAAACGTTTCTTTTTTCAACATTGTGCATGAA- 84361 || || || || || |||| || || | ||| || || |||| |||| Sbjct 961089 AAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCC---TTGTCGGTGAAG 961145 Query 84362 -ATAAAACGGGTCCGACAAC-GTCCATCCTCCTATGGACGGAAGAATCTTTAGGTGCGGG 84419 | || | ||| || | | ||||| || || ||||| || || ||||| || | || Sbjct 961146 AAGAAGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTTCAGGC 961205 Query 84420 TTCGCCAATTTAGCTGCCATCAATTGTCCAAAATTGCCTTTATACGGTTCGTTCCAAGCG 84479 | || ||| | ||||| || ||||| |||||||| || ||||||||||| | Sbjct 961206 CTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAA 961265 Query 84480 GACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGGCAATTTTAAAA 84539 |||| ||||| || || || || | |||||||| |||||||| || | | ||| ||| Sbjct 961266 GACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTTGAAA 961325 Query 84540 TCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTATCACTTTGAGA 84599 || | || || |||||||||| || |||| || |||||| || ||| |||| | | Sbjct 961326 TCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCTTTTA-A 961384 Query 84600 GC-ATCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAACAAGTGTGATAA 84658 || ||||| || |||| || |||||||| || ||||| ||||| | || || | | Sbjct 961385 GCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGTCAG 961444 Query 84659 ATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCCCATTCAACAAA 84718 || || | ||||| || || || || || | | |||||| |||||||| || || Sbjct 961445 GTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTACGAA 961504 Query 84719 ATACGCAGCAACCGTTTTATC----GTCTCTTCTGCCCGGTTTGTTGTTTTC-CCGCCA- 84772 || || |||| ||| | |||| || || ||||||| ||||| ||| | Sbjct 961505 GTATGCTCCAACAACTTTTCCAGAAGTCTGTT-TGAATAGTTTGTTCTTTTCTCCGAGAG 961563 Query 84773 TGTATATTCCAGCGGAGCCAAATGACCGCCGTCGGTGTCTGCCAC 84817 |||| || || |||| ||||||| |||||| || || || || Sbjct 961564 TGTACAT--CAAGGGAGGTAAATGACTGCCGTCAGTATCAGCTAC 961606 >seq593 Length=2014934 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| |||||| | ||||||||||||||||| || |||||| | || || | |||| Sbjct 755484 ACCAGCAGAGATTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACATTGTCAGATT 755425 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||| || ||||| |||||||||||||| | || | ||| | |||||||| Sbjct 755424 ACAACATCCAGAAAGAATCTACTCTTCACTTAGTGCTCCGTCTTAGAGGAGGA 755372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358107891361396