Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3650 255 5e-63 seq593 127 2e-24 >seq3650 Length=1334389 Score = 255 bits (282), Expect = 5e-63 Identities = 466/675 (69%), Gaps = 23/675 (3%) Strand=Plus/Minus Query 20272 AAAGGAGGCAAATACAACATGACCGTGAAACTTTGCAATGTTGACGGCTGTTCAACAAGC 20331 ||||| |||| ||| | ||| || |||| |||||| ||| || || || | || Sbjct 961684 AAAGGTGGCAGATATCAGATGCAAGTTGAACTCTGCAATTCTGATGGATGCTCCTCCAGT 961625 Query 20332 -AGCGCGGTTCAGGTCACCATCGCCGACACCGATGGATCTCATTTAAAACCTTTGATTTA 20390 ||| | | || ||| | | || || || || || ||||||| || ||||| || Sbjct 961624 GAGC-CTACTGAGATCATCGTAGCTGATACTGACGGCAGTCATTTACCTCCCTTGATGTA 961566 Query 20391 TGACTA-CATTGAAAACAATAAACGTTTCGAGAAGCGTACCGATAAAATCATTGCTGCAT 20449 ||| | ||||| || |||| ||| | || | | | ||| | ||| |||| Sbjct 961565 C-ACTCTCGGAGAAAAGAACAAACTATTCAAACAGACTTCTGGAAAAGTTGTTGGAGCAT 961507 Query 20450 ATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTACCCGTTCCCA 20509 | || ||||||||||| || || || ||| |||| || ||||| || || |||| | Sbjct 961506 ACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGATCGTGTTCCAATTCCTA 961447 Query 20510 ATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTATCAACGAC- 20568 | || ||||| | ||||| ||||| | ||||||||||| |||||||| ||||||||| Sbjct 961446 ACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGAGATGGCATCAACGACA 961387 Query 20569 GCGTTAAAGTTGTCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGCGCGGGCCGA 20628 || | |||| || || | |||| |||| | || | |||||| |||||| Sbjct 961386 GCTTAAAAGAGATCGAAGGC----AGTTTCCAAGCTCTTCAGAGATCGTGCAGCGGCCGA 961331 Query 20629 GATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCACAAAAAGGA 20688 || |||| ||||| | || |||||||||||||||||||| ||||||||||| || ||| Sbjct 961330 GAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAAACCACAGAAGGGA 961271 Query 20689 GTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCAACGAAACTG 20748 | || || ||||||||||| |||||||| |||||||| ||| ||||| | |||| Sbjct 961270 TTGTCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGATGTCTCTCAAACAA 961211 Query 20749 GCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACTTTATCCGATCCGTTT 20808 || ||| | ||||| | |||||||| ||||| || ||||| || ||||||| || Sbjct 961210 GCCAGGCCTGAACTTAAGATCCTACCTTCCATCGGTGGTTGGACACTAGCCGATCCCTTC 961151 Query 20809 TATCATATGCAC-------GATCCGATCGTACGCCAAGTTTTCATCGATTCTGTGGAAGA 20861 | || | | ||| || || | ||| ||| | |||||||| |||| Sbjct 961150 T-TCTTCTTCACCGACAAGGAGAAGAGAGATCGC------TTCGTTGATTCTGTAAAAGA 961098 Query 20862 GTTTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCCGGGAGG 20921 || | ||||| ||||| ||||| || || |||||||| || ||||| || || ||||| Sbjct 961097 TTTCCTCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGAGG 961038 Query 20922 CAAAGGTGCGAATCC 20936 || || || || || Sbjct 961037 TAAGGGAGCTAACCC 961023 >seq593 Length=2014934 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | |||||||| | || ||||| ||||| ||||| || ||| Sbjct 755598 ATACCACCACGGAGACGGAGTACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCG 755657 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | |||||||| ||| ||||||||||||| ||||| || Sbjct 755658 GACAATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGG 755717 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | |||| ||||| | | || Sbjct 755718 GGAATGCCCTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCC 755777 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| |||| || || |||||||||||||| Sbjct 755778 ACCTCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCAT 755827 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | ||||||||||| || ||||||||||| || || || ||||||| Sbjct 755391 ACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCTGACAATGTGCGTCCATCTTCA 755450 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || ||||| ||||| |||| | | ||| ||||| || ||||||||||||||||| Sbjct 755451 AGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGG 755510 Query 114294 ATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||| | ||| | | ||||| ||||| | | || || || | || | || || Sbjct 755511 AT-TTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCAACCTCTAATGTGATAGTCTT 755569 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||| || || || || |||||||| Sbjct 755570 GCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | ||| ||||| |||||||| ||||| || | || ||| |||||| Sbjct 755162 AACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAAAGTGTGCGACCATCTTC 755221 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || ||||| || |||| ||||| || || || || |||||||| || ||||| Sbjct 755222 GAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTG 755281 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| || ||||| | |||| ||||| | | || || |||| || | || || Sbjct 755282 AATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACCTCCAGTGTGATAGTCTT 755341 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || ||||| |||||||||||||| Sbjct 755342 TCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420114563616888