Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq348 89.7 1e-12 >seq348 Length=4065129 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 42610 TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 ||||||| ||||| ||||| | || || | || || ||||| |||||||| | | | Sbjct 3297412 TGTTCAATGCCATTGAGACTTTACCTTGTGTGAAAAAAAAGGCAGACTGGGCATTACAAT 3297471 Query 42670 GGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||||| || | ||| |||| || || |||||| | || || ||| | || || || Sbjct 3297472 GGATCGCCAG-CAAGACAGCAAACTTTGGAGAGAGGATAGTTGCATTTGCGGCTGTAGAA 3297530 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATG 42788 ||||||||||| || || || || || || |||||| | ||| || | | |||| Sbjct 3297531 GGCATCTTCTTTTCCGGAAGTTTTGCATCAATATTCTGGTTGAAGAAGCGTGGCTTGATG 3297590 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||||| | |||||| || ||||| || ||||| |||| Sbjct 3297591 CCCGGTTTGACCTTCAGCAATGAACTGATTTCTAGGGATGAGG 3297633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944293470374240