Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1964 118 3e-21 seq593 114 3e-20 seq2316 111 4e-19 >seq1964 Length=1360 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | ||| || | ||||| || || || ||||| || ||||||| | Sbjct 274 CCGCCGCGGAGACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 215 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || || || || || || || || ||||| ||||| || || ||||| Sbjct 214 AGTGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGG---TCTGGA 158 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || || ||||| || || || || || || || | || | ||| Sbjct 157 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCA 98 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || || || ||||||||||||||||| |||||||| Sbjct 97 ACTTCTAGGGTGATTGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 48 >seq593 Length=2014934 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||| | |||| || ||| |||||||| || ||||| | Sbjct 754917 CCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAA 754976 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || |||| ||||| || || ||||||| | ||| || |||||| Sbjct 754977 AGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGG---TCTGGG 755033 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||||||||||||||| || ||||| || || || || | ||| | ||| Sbjct 755034 GGGATACCTTCTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCA 755093 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| || |||| |||||| ||||| || ||||| Sbjct 755094 ACCTCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCAT 755143 Score = 95.1 bits (104), Expect = 3e-14 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| ||||| ||||| | || ||||| || ||||| | || Sbjct 755169 TGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAAAGTGTGCGACCATCTTCGAGCTGC 755228 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || || ||||| ||||| || ||| |||||| || || || || || || ||| Sbjct 755229 TTACCCGCAAAGATAAGACGTTGCTGA---TCTGGGGGAATGCCCTCCTTGTCTTGAATT 755285 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 |||||||| || || || || | || | || || || || ||||| ||||| || Sbjct 755286 TTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACCTCCAGTGTGATAGTCTTTCCT 755345 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || || ||||||||| Sbjct 755346 GTTAGCGTTTTAACAAAAATCTGCATT 755372 >seq2316 Length=6356476 Score = 111 bits (122), Expect = 4e-19 Identities = 143/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| | || ||||| |||||||| ||||| || ||||| Sbjct 2659536 TTCCTTCTGGATGTTGTAGTCGGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAA 2659477 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | || ||| |||||| || || ||||| || || ||||||||||| || Sbjct 2659476 GATCAACCTTTGCTGA---TCTGGGGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTAC 2659420 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| |||| || | ||| || || | ||| || || || || || || || || Sbjct 2659419 ATTTTCAATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTT 2659360 Query 288459 GACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 2659359 TACGAAGATCTGCATT 2659344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179595847116572