Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3650 206 3e-48 seq2316 105 7e-18 seq3450 102 8e-17 seq593 102 8e-17 seq1964 100 3e-16 >seq3650 Length=1334389 Score = 206 bits (228), Expect = 3e-48 Identities = 527/783 (67%), Gaps = 33/783 (4%) Strand=Plus/Minus Query 27995 aaaaTTGTGGCCGCCTATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTCCCGTCGAC 28054 ||| |||| | || || ||||| || ||||| ||||| | | | | || || ||||| Sbjct 961522 AAAGTTGTTGGAGCATACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGAT 961463 Query 28055 AAAGTGCCCGCGCCCAACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGC 28114 || || || |||||| | || || || ||||| ||| | || || ||||| || Sbjct 961462 CGTGTTCCAATTCCTAACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGA 961403 Query 28115 GACGGCATAAACGACGCCCTCAAGACCGTTCCC-GGCAGTTTCGAGGCGCTGCAGCGCTC 28173 || ||||| |||||| | | || | | || ||||||||| | || || ||| | || Sbjct 961402 GATGGCATCAACGACAGCTTAAA-AGAGATCGAAGGCAGTTTCCAAGCTCTTCAGAGATC 961344 Query 28174 GTGCGCCGGGCGCGCCGACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAA 28233 |||| ||| || | || ||||| || | || |||||||| |||||||| ||||||| Sbjct 961343 GTGCAGCGGCCGAGAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAA 961284 Query 28234 GCCGCAAAAGGGCGTCTCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGAT 28293 || || ||||| | ||| | |||||||| || ||||||||||||||||| || |||| Sbjct 961283 ACCACAGAAGGGATTGTCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGAT 961224 Query 28294 GAGCGTCAAATTAGCCAATCC-GCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACGC 28352 | ||||| ||||| || | |||| ||| | || | || ||||| || ||||| | Sbjct 961223 GTCTCTCAAACAAGCCAGGCCTGAACTT-AAGATCCTACCTTCCATCGGTGGTTGGACAC 961165 Query 28353 TGTCGGACCCATTCT--TTC-ACATGCACGACGCGACCGTGCGCCAAACG-TTCATCGAT 28408 | | || || |||| ||| || || | | || | | | | || ||| | ||| Sbjct 961164 TAGCCGATCCCTTCTTCTTCTTCACCGACAAGGAGA-AGAGAG---ATCGCTTCGTTGAT 961109 Query 28409 TCCGTCGTGGACTTTCTGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAG 28468 || || || || || ||||||||||||||||||| || || |||||||||||||| Sbjct 961108 TCTGTAAAAGATTTCCTCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAA 961049 Query 28469 TTTCCGGGCGGCAAAGGAGCCAATCCCGATGTCGGCAACGCCGAGCGCGACCGCGCCACC 28528 || || || || || ||||| || ||||| |||| | | |||| ||| | | Sbjct 961048 TTCCCTGGAGGTAAGGGAGCTAACCCCGACCTCGGTAGC-CCGA--AAGACGGAGATGTT 960992 Query 28529 TACACTGCCCTGCTGCACGAGCTGCGCATCCAA--CTGGACGCCCTCGGCGCTCGCACCG 28586 ||| || | || | || |||| | || || ||| ||| || | | | Sbjct 960991 TACGTTGAATTAATGAAGGAATTGCG--TGAAATGTTGAACGACCT---TTCT-GAAGAG 960938 Query 28587 ACCGCT----ACTATCCGCTGACGTCGGCCATCAGCGCGGGCAACGACAAGATCGCCGTG 28642 |||| | | || |||||| || || ||||| || || || |||||| || Sbjct 960937 ACCGGTAAGAAATACGAGCTGACCTCCGCTATCAGTGCTGGATGGGATAAGATCCAAGTT 960878 Query 28643 GTCGATTACGCCGAAGCGCAAAAGTACCTCGACACGATTTTTCTCATGACGTACGATTTC 28702 ||||||||| ||||| |||||||| | ||| || || || |||| || ||||| Sbjct 960877 GTCGATTACAGTGAAGCTCAAAAGTATATGGACCATATCTTCCTTATGAGTTATGATTTT 960818 Query 28703 AAAGGCGCGTGG---AGCAACACCGATCTGGGCCATCAGGCGGCACTGTTTGCGCCCGCG 28759 |||||||| ||| | | ||||| || || |||||| | |||| | || ||||| Sbjct 960817 AAAGGCGCCTGGTCTAACGACACC---CTCGGTCATCAGACTCCACTTTACGCACCCGCT 960761 Query 28760 TGG 28762 ||| Sbjct 960760 TGG 960758 >seq2316 Length=6356476 Score = 105 bits (116), Expect = 7e-18 Identities = 457/712 (64%), Gaps = 22/712 (3%) Strand=Plus/Plus Query 152709 GCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAA 152768 || ||||||||| | || ||||||||||| || ||||| | || ||| | |||| Sbjct 2965224 GCAGCAGGCTTTATACGTAAATAATACATTCCTGTTTTCAAACCCATTTTCCATGCGTAA 2965283 Query 152769 TTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGG 152828 |||||| || |||| | || |||||| ||||| | ||||| ||||| Sbjct 2965284 AAGTGAATTGATGTCAATTTTCCATAATTCGGTTCAGCCACATGAATGTTAAAAGATTGA 2965343 Query 152829 CTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCGTTTTGCCTTCATC 152888 || || ||||| || || || || || ||||| | ||| | ||| | ||| Sbjct 2965344 CTTTGGTCTATAAATGCACCTCGATCAGCAGCCATTTTAATTGTAGTTTTAACAGAAATC 2965403 Query 152889 TCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATA 152948 ||||| | ||||| ||||| | | ||| | | ||||||| || || || ||||| Sbjct 2965404 TCCCAAACTGTTTTATACAATTCTCTAATGTCCTTTGGTATACGCTCGATATTTTGAATG 2965463 Query 152949 GAGCCCTTGT-GTGCAAAAATAGCGTTTCGTATTTCG--GGCGTGTACACGTTCAGTTTA 153005 || || |||| ||| | | || ||| || ||| | | || | | | | Sbjct 2965464 GAACCATTGTTGTGAATTATCAGATTTTTC-ATGTCGTCGTCCCATAAATCTGCC--TGC 2965520 Query 153006 ATGAGGTCATCG-ATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCT 153064 | | ||| ||| | ||| | ||||| || || || || || || | ||| || ||||| Sbjct 2965521 GTCAAGTC-TCGCAACAAATGATGGTTAACAACCTGGAATTCCCCAGACAAAACACGTCT 2965579 Query 153065 C----AAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAG 153120 |||| | ||| | || || |||||||||||||| || || || | ||||| | Sbjct 2965580 TTGGTAAATGT---TTGAT-GTAAATGGTTCAAAGGATTCATTGTTTCCCAAGATTTGGG 2965635 Query 153121 CCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAA 153180 | || | || || ||||| || | || | ||||| |||| || || || Sbjct 2965636 CTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGCGAATTGCGCAGCCCATGTTTGGCAA 2965695 Query 153181 TGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGT 153240 | | || || || | ||| ||||| || | || || || | ||||||||| | Sbjct 2965696 TTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCAGATGGAGTTTTATCCCACATGTCAT 2965755 Query 153241 ACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTT 153300 | || || | ||| | || || ||||| || || | ||||| || || || | || Sbjct 2965756 ATTGCAAAATGCCTTGGCTTGCTGGACTTCCTTCATATGTACTATAAACTCCTTCTCTTT 2965815 Query 153301 GGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTAT 153360 | ||||||||||| || || || | || || || ||||| |||||| |||||||| | Sbjct 2965816 GCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAATATATCGTTTCGAAGATTTGTTGGT 2965875 Query 153361 TGAG---AACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAA 153409 | || || ||| | || || || || || ||||||| ||| ||||| Sbjct 2965876 TAAGTTTAATTGCC---TTGTCACTTTCATAAGGAATGCGCATCAGAACAAA 2965924 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| | ||| || || || | |||| ||||| || |||||||||||| | Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 2659512 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||| |||| |||| | | || || || || || Sbjct 2659511 AATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGGA 2659452 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| |||| | ||||| | ||| | ||||| | | || || Sbjct 2659451 ATGCCCTCTTTGTC-TTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAAC 2659393 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | |||||||| || || |||||||| || |||||||| Sbjct 2659392 CTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq3450 Length=502752 Score = 102 bits (112), Expect = 8e-17 Identities = 111/144 (77%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 57299 TGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTT 57358 ||||||||| |||||| | |||||||| || ||||||| ||| |||| |||||||| | Sbjct 192350 TGGCCTCGATGTTGCCGAGATCGCCGACATGGCGCACGGTGGCGGTGGGCGCGCCGTGCT 192409 Query 57359 CGCTGC--CGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCC 57416 | |||| | |||| || ||||| |||| || |||||||||||||| || |||| || Sbjct 192410 C-CTGCTTCCCTGGG-TTGAAGTGTGCGCCGGCGGACGTGCAGCCGTTTGTGTTGTCACC 192467 Query 57417 GAACTCGTGAACGTGAAATCCGTG 57440 ||||| || || || || || || Sbjct 192468 AAACTCATGCACATGGAAACCATG 192491 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 57115 CCGATGATGCCGCAGCCGAGACGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAGCGGATGT 57174 || |||| |||||| ||| || |||||| |||||||||||||||||| ||| || Sbjct 191671 CCTATGACCCCGCAGGCGATGCGCGCGCCCGCGTTGCCGGTGGTCTTGCTGAGCTCGTGG 191730 Query 57175 TCGGTGAGGCCGAGATCGTCGCGCTTCGCGTGAACCACCAGACTGCGGCCGA 57226 || || |||||| |||||| | | |||||| |||||||| |||| |||| Sbjct 191731 CCGCCGATGCCGAGGTCGTCGGGGTCCGCGTGCACCACCAGCGTGCGCCCGA 191782 >seq593 Length=2014934 Score = 102 bits (112), Expect = 8e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| ||||| | ||| || || | | || ||||||||||| |||||||| | Sbjct 755144 GCCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTC--T 755201 Query 138447 CATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 | ||| |||| || ||||| || ||||| | | |||| ||||| || || || || Sbjct 755202 GAAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGG 755261 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTC 138563 || || || || ||||| ||| |||| | ||||| | || | ||||| | | ||| Sbjct 755262 GGAATGCCCTCCTTGTCT-TGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTC 755320 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| | || | || || || || || ||||| |||||||||||||| Sbjct 755321 CACCTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||||||| | | | || |||||||| ||||| |||||| | Sbjct 755601 CCACCACGGAGACGGAGTACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGAC 755660 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | |||||||||| |||| |||||||| ||||| || || Sbjct 755661 AATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGA 755720 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| ||| || | | || | ||||| | | ||||||| Sbjct 755721 ATGCCCTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACC 755780 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| || || |||||||||||||| Sbjct 755781 TCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCAT 755827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||| | || || || | |||| |||||||| ||||||||||| Sbjct 754917 CCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAA 754976 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| || ||||| || | | |||| | | ||| ||||| || || Sbjct 754977 AGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 755036 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||||||||| || ||| || ||| | | || | ||| || | | || ||| Sbjct 755037 ATACCTTCTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACC 755096 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | || || || |||| ||| || || ||||| |||||| || Sbjct 755097 TCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCATGCCT 755147 >seq1964 Length=1360 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || ||||| | | |||||||| || |||||||||||| Sbjct 275 GCCGCCGCGGAGACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 216 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||| | || || |||| | |||| ||||| || ||||| ||||| Sbjct 215 GAGTGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGG 156 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| || || | | || | |||||| | | || || Sbjct 155 GATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAAC 96 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||||||| || || || |||||||| Sbjct 95 TTCTAGGGTGATTGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496238368493280