Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3650 185 8e-42 seq3450 98.7 9e-16 seq593 96.9 3e-15 >seq3650 Length=1334389 Score = 185 bits (204), Expect = 8e-42 Identities = 363/534 (68%), Gaps = 2/534 (0%) Strand=Plus/Minus Query 22274 GAAAACAACAAGCGTTTCAAGACGCATCCTAATAAAATTGTCGCCGGCTATTTTGTCGAG 22333 ||||| ||||| | ||||| | | || ||| |||| | | || || || || Sbjct 961555 GAAAAGAACAAACTATTCAAACAGACTTCTGGAAAAGTTGTTGGAGCATACTTCGTAGAA 961496 Query 22334 TGGGGAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCGAACCTGTCGCAT 22393 ||||| ||||||| | | || || | ||| || || | || |||||| | ||| Sbjct 961495 TGGGGTGTGTACCCGAGAAAATTCCCAGTCGATCGTGTTCCAATTCCTAACCTGACTCAT 961436 Query 22394 TTGCTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGACGCCCTGAAAACG 22453 || || ||||| ||| | ||||| ||||| ||||| |||||||||||| | | ||| | Sbjct 961435 TTACTATACGGCTTCATTCCAATTTGCGGTGGAGATGGCATCAACGACAGCTTAAAAGAG 961376 Query 22454 GTGCCGGGAAGCTTCGAGGCGTTGCAACGGTCGTGCGTCAATAGAGCCGATTTCAAGGTG 22513 | || || ||| | || | || | |||||| | ||| |||||||| || Sbjct 961375 ATCGAAGGCAGTTTCCAAGCTCTTCAGAGATCGTGCAGCGGCCGAGAAGATTTCAAAGTA 961316 Query 22514 ACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTGTCGTCGTGGAAC 22573 | || |||||||| ||||| || | || ||||| || || || |||| || |||||| Sbjct 961315 TCTATTCACGATCCTTGGGCCGCTCTTCAGAAACCACAGAAGGGATTGTCTTCCTGGAAC 961256 Query 22574 GAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCGAATCCTCATCTC 22633 ||||| ||||||||||||||||| || ||||| | | ||| ||| | ||| | || Sbjct 961255 GAACCTTACAAAGGCAACTTTGGCCAGCTGATGTCTCTCAAACAAGCCAGGCCTGAACTT 961196 Query 22634 AAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTATCATATGCA-CGA 22692 || | || | || ||||| || ||||| | ||||||| || | || | | || ||| Sbjct 961195 AAGATCCTACCTTCCATCGGTGGTTGGACACTAGCCGATCCCTTCT-TCTTCTTCACCGA 961137 Query 22693 CAAGAACGTGAGACAAATTTTCATCGATTCGGTGGAAGAGTATTTGATCACGTGGAAGTT 22752 |||| | |||| | ||| | ||||| || |||| | | | || |||||||| Sbjct 961136 CAAGGAGAAGAGAGATCGCTTCGTTGATTCTGTAAAAGATTTCCTCTTGACCTGGAAGTT 961077 Query 22753 CTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGCGAATCC 22806 ||| || || || || || |||||||| || || || || ||||| || || || Sbjct 961076 CTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGAGGTAAGGGAGCTAACCC 961023 >seq3450 Length=502752 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/142 (76%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 50654 GCTTCTATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGT-- 50711 || || |||||||| ||||||||||| ||||| || |||| |||| |||||||| | Sbjct 192352 GCCTCGATGTTGCCGAGATCGCCGACATGGCGCACGGTGGCGGTGGGCGCGCCGTGCTCC 192411 Query 50712 TGCGGCCCAACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGA 50771 ||| ||| || || ||||| ||||||| |||||||||||||| | |||| || | Sbjct 192412 TGCTTCCC--TGGGTTGAAGTGTGCGCCGGCGGACGTGCAGCCGTTTGTGTTGTCACCAA 192469 Query 50772 ATTCGTGCACGTGGAACCCGTG 50793 | || ||||| ||||| || || Sbjct 192470 ACTCATGCACATGGAAACCATG 192491 >seq593 Length=2014934 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| ||||||||||| ||||| ||||||||| |||||| || || || || || ||||| Sbjct 754760 ATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTT 754819 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||| | | |||| |||||||| || ||||| | || | Sbjct 754820 GTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCTACTTCTAATGTGAT 754879 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| ||||| ||||| |||||||| Sbjct 754880 AGTCTTGCCTGTCAGGGTTTTAACAAAGATCTGCAT 754915 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || | ||| || | ||||| || | ||| || || |||||||||||||| || Sbjct 755145 CCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAA 755204 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || || |||| | || |||||||| || || Sbjct 755205 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 755264 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| |||||| || | | || | ||||| | ||| || Sbjct 755265 ATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACC 755324 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || || ||||| |||||||||||||| Sbjct 755325 TCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | || ||||| | || || || ||||| || || || ||| | Sbjct 755601 CCACCACGGAGACGGAGTACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGAC 755660 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | |||||| || ||| |||| | |||||||| || || || Sbjct 755661 AATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGA 755720 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| || ||| | | || | ||||| | | ||| || Sbjct 755721 ATGCCCTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACC 755780 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| |||| || || |||||||||||||| Sbjct 755781 TCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCAT 755827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || || ||||| || ||||| || Sbjct 754917 CCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAA 754976 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| ||||||||||| ||||| ||||||||| |||||| || || || Sbjct 754977 AGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 755036 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || ||| ||| || |||| | || | ||| || | | || || Sbjct 755037 ATACCTTCTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACC 755096 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | ||| | || ||||| |||| ||| || || ||||| |||||| || Sbjct 755097 TCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCATGCCT 755147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475477773873760