Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3650 311 8e-80 seq2316 255 5e-63 seq593 100 3e-16 seq1964 86.0 6e-12 >seq3650 Length=1334389 Score = 311 bits (344), Expect = 8e-80 Identities = 643/956 (67%), Gaps = 3/956 (0%) Strand=Plus/Plus Query 50157 TAATCAACTACGCCGTCTTCCCAAGTGCCTGCCGCCGGGCCGGTGGCGATTCCCGTAAAC 50216 || |||||||| ||||||| |||||| ||| | || || || ||| | || || || Sbjct 960558 TAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGTGAAT 960617 Query 50217 GGATTGTCGTCTTTGTAGCCGGTCACGCCGCGCCAACCCCTGCCGTACATGGCCACGCCT 50276 ||||||| ||||| ||| || || ||| || | |||||||| || ||||| Sbjct 960618 GGATTGTTGTCTTCGTAATTATGAACACCAGTCCAGCCGCGTCCGTACATAGCTACGCCC 960677 Query 50277 ACGATTATTTTGCTCGGCTGCACGTTTTGATCGAGAAGAACGTTTACCGCAAAATCGGTC 50336 || | || || | || | |||| |||| | || | | || || |||| || || Sbjct 960678 ACCACAATCTTCTTAGGGTTCACGCCTTGAGCAAGCAAATATTTCACACCAAAGTCAGTG 960737 Query 50337 GTGTACTTTTCGTCGGTGTTCCATGCGGGCGCATACAAAGGCGTCTGATGTCCCAAATCG 50396 || || |||| | | |||||| ||||| || || | || |||||||| || | | Sbjct 960738 GTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGATGACCGAGGGTG 960797 Query 50397 ACGGTGGACCAAGCGCCTTTAAAATCGTAACTCATTAAAAATATTTTATCTAAATAATTT 50456 || | ||||| |||||||||||||| |||||||| | || || | || | ||| ||| Sbjct 960798 TCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCATATACTTT 960857 Query 50457 TGAGCGTCGCCGTAATTGACAAGGGCGATTTTATCGTAACCTGCGCTAACGGCGCTCGTC 50516 ||||| || | ||||| ||||| ||| ||||| | || || || | ||| ||| Sbjct 960858 TGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCGGAGGTC 960917 Query 50517 AATTCGAATTCGCGGCCGGTGACGCGTTGAAGATCGTCCAGCATGTCGCGCAGATCGCGA 50576 | ||| ||| ||||| | ||| |||| || ||| || |||| || Sbjct 960918 AGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCACGCAATTCCTTC 960977 Query 50577 AGCAGCACAACGTACGTGAGTCCGTCTTTGTGAGGATCGCCGACTGCGGGATTGGCGCCG 50636 | | ||||||| ||||||||| | | |||| |||| || || || Sbjct 960978 ATTAATTCAACGTAAACATCTCCGTCTTTCGGGCTA---CCGAGGTCGGGGTTAGCTCCC 961034 Query 50637 TTGCCGCCGGGAAACTCCCAATCGATGTCGACGCCGTCGAAAAACTTCCAAGTCAGCAGA 50696 || || || || || |||||||||||||| || || ||||| |||||||| |||| || Sbjct 961035 TTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTCAAGAGG 961094 Query 50697 AACTCGCGTACCGATTCCACAAAAACGGCTCGTTTTTCCGCGTCGTGCATGTGAAAAAAT 50756 || || ||| || || || || ||| || ||| |||| | | || || Sbjct 961095 AAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTGTCGGTGAAGAAGAAGAAG 961154 Query 50757 GGATCGGACAACGTCCATCCGCCTATAGACGGTAACACCTTGAGGTGCGGGTTGGCtttt 50816 ||||||| | ||||| || || || || |||| | ||| || | || |||||| | Sbjct 961155 GGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTTCAGGCCTGGCTTGT 961214 Query 50817 tttATCGCCATCAGTTGACCGAAATTTCCTTTGTACGGTTCGTTCCAAGCCGAGACGCCC 50876 || | | |||||| || || || || |||||||| ||||||||||| | || | ||| Sbjct 961215 TTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAAGACAATCCC 961274 Query 50877 TTTTGTGGTTTCTGTACCGCAGCCCACGGGTCGTGAATGGACACTTTAAAATCGGCTCGG 50936 || ||||||||||| | || ||||| || |||||||| || ||||| ||||| ||||| Sbjct 961275 TTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTTGAAATCTTCTCGG 961334 Query 50937 CCGGCGCACGAACGCTGCAGCGCCTCGAAACTGCCCGTGACGGTTTTCAACGCGTCGTTG 50996 ||| |||||| | ||| || || | ||||||||| || ||| || ||||||| Sbjct 961335 CCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCGTTG 961394 Query 50997 ACGCCTTCGCCGCCGCAAATCGGCACGAAACCGTACAGCAAATGCGACAAATTGGGGGCA 51056 | ||| || || |||||||| || | ||| ||||| || ||||| | || || || Sbjct 961395 ATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGTCAGGTTAGGAATT 961454 Query 51057 GGAATTTTGTCAGCGGCGAACGCACGCGCGTACACTCCCCATTCTACAAAATACGC 51112 |||| || | | ||| | || |||||| ||||||||||| || || || Sbjct 961455 GGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTACGAAGTATGC 961510 >seq2316 Length=6356476 Score = 255 bits (282), Expect = 5e-63 Identities = 933/1452 (64%), Gaps = 18/1452 (1%) Strand=Plus/Minus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAA---ACGCAAA 123293 ||| ||||||| |||||||| | | || | || ||||| || ||||| ||| | Sbjct 2966635 ATGTTGCGAGTGTACAATAATACAGCAAGGTATGTTGACCAAGGAGGCAACAAACGACCA 2966576 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 || || | || || || ||||||| |||||| |||||||| || |||||| || | Sbjct 2966575 GGTGCATTTGCTATTTACTTAGAACCCTGGCACTCTGATGTGTTTGAGTTTTTAGATCTG 2966516 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 ||| || | || |||||| | |||| | || | || || || |||||| | Sbjct 2966515 AAAAAGAATACTGGCAAAGAAGAAGTCAGAGCCAGAGAACTATTTTATGCATTATGGATC 2966456 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473 || |||||||||||| || || || | || | ||||| | ||||| || || Sbjct 2966455 CCAGATTTGTTTATGAAGCGTGTTGAAAAAGATGAAATGTGGAGTTTAATGTGCCCTCAT 2966396 Query 123474 CGGTGTCCCGG-CTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATA 123532 || ||||| |||| |||| || || | | ||||| | || || | |||||| Sbjct 2966395 GATTGCCCCGGTCTTGC-CGACTGTTGGGGAGAAGAATTTGAAGCATTATATGGGCAATA 2966337 Query 123533 CGAGCGCGAAGGCAAACAGGTTAGTCAGGT---TCCG-GCACGTGATTTGTTCAAATTTA 123588 || ||| ||| || || || | | |||| || | || ||| ||| | Sbjct 2966336 TGAAG----AGGAAAAGAGATTTGTTAAGCAAGTCCGAGCTCAAGAACTGTGGAAAGCAA 2966281 Query 123589 TTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACA 123648 | || ||| ||||||| ||||| || || || || ||| | || ||||| | || |||| Sbjct 2966280 TCATAGAAGCACAAGTGGAAACAGGCACACCATATATGTTATATAAAGATTCTTGTAACA 2966221 Query 123649 GGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTA 123708 | |||| |||||| | || | || || || ||||| |||||| | ||| | |||||| Sbjct 2966220 GAAAAAGCAATCAAAAAAATCTTGGCACCATTAAATGCAGTAATTTGTGCACAGAAATTG 2966161 Query 123709 TCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATC 123768 | ||||||| || ||| |||| || || |||||||| ||||| ||| |||| Sbjct 2966160 TTGAATACACTTCAGCAGATGAAGTTGCTGTTTGTAATTTAGCTTCTATTGCTTTGAACA 2966101 Query 123769 GTTGCGTC---GAAAACGGCGCTTTTAA-TTTCCAAACGCTCAAACGCATAACAAAAACT 123824 | | || ||| | | | || ||| |||| | | | | | ||||| | Sbjct 2966100 GGTTTGTTAATGAAGATAAAACATACAACTTTACAAA-GTTGAGAGAAGTCACAAAGATA 2966042 Query 123825 GTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGT 123884 | | | || | || |||||||| |||||||||||||| || || ||||| Sbjct 2966041 ATCACACAAAACCTTAATAAAATTATTGATGTTAATTTTTACCCAGTGCCAGAAGCAAAG 2965982 Query 123885 TTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTT 123944 || || || |||||||| | || | || | |||||||| || || | ||| Sbjct 2965981 AATTCCAACATGCGCCACAGACCAATTGGGATTGGAGTGCAAGGGTTAGCTGATACATTT 2965922 Query 123945 GTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCC 124004 || || ||||||| || || ||||| ||| | |||| ||||| ||||| | Sbjct 2965921 GTTCTGATGCGCATTCCTTATGAAAGTGACAAGGCAATTAAACTTAACCAACAAATCTTC 2965862 Query 124005 GAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCG 124064 ||||| || |||||||| || || || || || |||||||| ||| ||| | || | Sbjct 2965861 GAAACGATATATTACGGAGCATTAGAAGCCAGTTGCGAACTGGCGCAAAGAGAAGGAGTT 2965802 Query 124065 TACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAAT 124124 || | || | || || || || |||| ||| |||||||| || ||||||||| || Sbjct 2965801 TATAGTACATATGAAGGAAGTCCAGCAAGCCAAGGCATTTTGCAATATGACATGTGGGAT 2965742 Query 124125 GCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGT 124184 || || | || | ||||||||| ||||||||| || || | | || || Sbjct 2965741 AAAACTCCATCTGATCTCTGGGACTGGTCTGTTTTAAAAGAAAAAATTGCCAAACATGGG 2965682 Query 124185 TTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGA 124244 |||| || ||||| || | || ||||| || || | || || ||||| || ||| Sbjct 2965681 CTGCGCAATTCGCTTTTATTAGCTCCAATGCCTACAGCGTCTACAGCCCAAATCTTGGGA 2965622 Query 124245 AACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGC 124304 ||||| |||||||| || || || || || | ||| |||| || || | || Sbjct 2965621 AACAATGAATCCTTTGAACCATTTACATCAAACATTTACCAAAGACGTGTTTTGTCTGGG 2965562 Query 124305 GATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGAT 124364 || || || || | || ||||||||| || |||||| | | | |||| | || Sbjct 2965561 GAATTCCAGGTTGTTAACCATCATTTGTTGCGAGACTTGACGCAGGCAGATTTATGGGAC 2965502 Query 124365 GAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATT 124424 || ||||| || || ||| | ||| | | || |||| || Sbjct 2965501 GACGACATGAAAAATCTGATAATTCACAACAATGGTTCCATTCAAAATATCGAGCGTATA 2965442 Query 124425 CCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATT 124484 || | || | | || |||| ||||| || ||||| || |||| |||| Sbjct 2965441 CCAAAGGACATTAGAGAATTGTATAAAACAGTTTGGGAGATTTCTGTTAAAACTACAATT 2965382 Query 124485 GAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTA 124544 ||||||| | || ||||| || | | || |||||||||||||||||| | ||| Sbjct 2965381 AAAATGGCTGCTGATCGAGGTGCATTTATAGACCAAAGTCAATCTTTTAACATTCATGTG 2965322 Query 124545 GCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTC 124604 || ||||| | || | |||| || ||| | |||| |||| | || | Sbjct 2965321 GCTGAACCGAATTATGGAAAATTGACATCAATTCACTTTTACGCATGGAAAATGGGTTTG 2965262 Query 124605 AAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTC 124664 ||||| || |||||||| ||| | | || || || || |||| ||||| || || || Sbjct 2965261 AAAACAGGAATGTATTATTTACGTATAAAGCCTGCTGCTAATGCTATTCAGTTCACGGTT 2965202 Query 124665 GACAAATCTAAA 124676 |||||||||||| Sbjct 2965201 GACAAATCTAAA 2965190 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || ||||||||||| | || || ||||||||||| ||||| || || ||| | Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCG--G 2659514 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| || || ||||| || ||| | ||||| | |||||| || || | Sbjct 2659513 ACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGG 2659454 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 ||||||| ||||| ||||||||||| ||| | ||| | ||||| || | || | Sbjct 2659453 GAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAA 2659394 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || | || | ||||| || || || |||||||| || || ||||| Sbjct 2659393 CCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq593 Length=2014934 Score = 100 bits (110), Expect = 3e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | |||| |||||| || |||||||||||||| ||||| ||| Sbjct 755598 ATACCACCACGGAGACGGAGTACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCG 755657 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| ||||| ||||| || ||| | || | || |||||||| | Sbjct 755658 --GACAATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTG 755715 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | |||||||| || || ||||| || ||| || | || | ||||| |||| || Sbjct 755716 GGGGAATGCCCTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCT 755775 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || | || | || ||||| || | || || |||||||| |||||| Sbjct 755776 CCACCTCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCATC 755828 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 || ||||| ||||||||||| ||||| || || ||| || | || ||| || | | Sbjct 755169 TGAAGCGTCGATTCCTTTTGAATATTGTAGTC--TGAAAGTGTGCGACCATCTTCGAGCT 755226 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | || || || | || | |||||||| || || |||||||| || || |||||||||| Sbjct 755227 GCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGAATTT 755286 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | ||| | || | ||||| || | ||| || || || || | || || || | Sbjct 755287 TCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACCTCCAGTGTGATAGTCTTTCCTG 755346 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 |||| ||||| |||||||| ||||| Sbjct 755347 TTAGCGTTTTAACAAAAATCTGCAT 755371 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||||||||||||||| || || || | ||| ||| || | ||| Sbjct 754941 TGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGT 755000 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| |||||||| || || || ||||||||||| || || || Sbjct 755001 TTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCTTTATCCTGGATCTTG 755060 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| || | ||| || |||| || || || | || | || ||||| || Sbjct 755061 GCTTTGACATTCTCAATGGTATCAGAAGGTTCAACCTCCAAGGTGATGGTCTTGCCTGTC 755120 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || ||||||||||| Sbjct 755121 AAAGTCTTCACGAAAATTTGCAT 755143 >seq1964 Length=1360 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| | ||| || || || ||||| ||||| || || ||| | Sbjct 274 CCGCCGCGGAGACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 215 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| ||||| || || || || | || | ||||||||||| || || Sbjct 214 AGTGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGG 155 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || ||||| || || || | || | |||||| || | || ||| Sbjct 154 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACT 95 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | |||||||| || ||||| || || || || ||||| Sbjct 94 TCTAGGGTGATTGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451981311745040