Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2316 96.9 6e-15 >seq2316 Length=6356476 Score = 96.9 bits (106), Expect = 6e-15 Identities = 171/247 (69%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 203827 TCGAACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAG 203886 || ||| || | ||||| |||||||||||||| || || | |||||| | | | | Sbjct 2965184 TCTAACTTTAGATTTGTCAACCGTGAACTGAATAGCATTAGCAGCAGGCTTTATACGTAA 2965243 Query 203887 ATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTT 203946 ||| ||||| || || || | ||| | | ||| |||| | ||| || || | || ||| Sbjct 2965244 ATAATACATTCCTGTTTTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTT 2965303 Query 203947 GCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGC 204006 | || || || |||| |||||||| | ||| || |||||||| || ||| || | Sbjct 2965304 TCCATAATTCGGTTCAGCCACATGAATGTTAAAAGATTGACTTTGGTCTAT-AAATGCAC 2965362 Query 204007 C-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 | ||||| || ||||| || || | || || ||||||||||| || || || ||| Sbjct 2965363 CTCGATCAGCAGCCATTTTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACA 2965422 Query 204066 CGtctct 204072 ||||| Sbjct 2965423 ATTCTCT 2965429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795116694609440