Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq593 131 4e-25 seq2316 111 4e-19 seq1964 109 1e-18 >seq593 Length=2014934 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || |||||||||| ||| ||||| | ||| || | ||||||||||| ||| Sbjct 755625 TGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTCCAACTGT 755684 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || |||||||||||||||||||||||||| || ||| || || || || |||||| Sbjct 755685 TTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTT 755744 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || || | ||||||| | || || ||||| ||||| ||||| || || Sbjct 755745 GCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCTGTC 755804 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || ||||||||||| || Sbjct 755805 AATGTCTTCACAAAAATCTG 755824 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || |||||||||| ||||||||||| | || | ||||| Sbjct 754932 AGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCC 754991 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || || || ||||| | | ||||||||| || || |||||| ||| Sbjct 754992 TCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCTTTATCC 755051 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || || | ||| || | | ||| || ||||| ||||| ||| Sbjct 755052 TGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACCTCCAAGGTGATGGTC 755111 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| ||||| |||||||| Sbjct 755112 TTGCCTGTCAAAGTCTTCACGAAAATTTG 755140 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||||| | || | ||||| || ||||| || || || |||| Sbjct 754726 CCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGA 754785 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | | ||||||||| || || ||||| || || ||||| ||| || | Sbjct 754786 TCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCT 754845 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | |||||| || || ||||| ||||| || || || ||||| |||| Sbjct 754846 CGATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTTAACAA 754905 Query 199620 AAATTTG 199626 | || || Sbjct 754906 AGATCTG 754912 >seq2316 Length=6356476 Score = 111 bits (122), Expect = 4e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || |||| || | ||| || || || ||||| |||| ||||||||| | ||| || Sbjct 2659566 TCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAATGT 2659507 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||| | ||| || ||||||||||| | | ||||| || || ||| || Sbjct 2659506 ACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGGAATGCC 2659447 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| || ||||| ||| |||| || ||| | ||||| | | ||| || || | Sbjct 2659446 CTCTTTGTCTTGAAT-TTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAACCTCTA 2659388 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || ||||||||||| ||||| || || || || Sbjct 2659387 ACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTG 2659348 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| || ||||| ||||||||| | || ||| |||| |||||| ||||||| Sbjct 2659474 ATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCCGACTACAACATCCAGAAG 2659533 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 || || || |||||| | || ||||| || ||| Sbjct 2659534 GAATCAACACTTCACTTGGTGTTGAGGCTGCGA 2659566 >seq1964 Length=1360 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| |||||||| |||| ||||||||| | | || | ||||| |||| |||| Sbjct 250 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACCATCCTCCAACTGC 191 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| ||||||||||| |||||||| ||| || ||||| || || ||||| Sbjct 190 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTG 131 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || |||| |||||| | | ||| || || | ||||| || || || || Sbjct 130 GCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTGTTTTGCCAGTC 71 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || Sbjct 70 AGAGTCTTGACGAAGATCTG 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178863083489558