Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3650 214 2e-50 seq593 113 5e-20 seq1964 102 9e-17 seq2316 93.3 5e-14 >seq3650 Length=1334389 Score = 214 bits (236), Expect = 2e-50 Identities = 641/984 (65%), Gaps = 29/984 (3%) Strand=Plus/Minus Query 98734 AAAGTTACGGGGGCTTATTTTGTAGAATGGGGTGTTTACGATCGCAAATTTCCAGCAGAT 98793 |||||| || || || || |||||||||||||| ||| | ||||| |||| ||| Sbjct 961522 AAAGTTGTTGGAGCATACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGAT 961463 Query 98794 AAAGTGCCTATCCCCAATTTGACACACCTTTTGTATGGTTTTATCCCCATTTGCGGAGGC 98853 || || || || || |||| || | | || || || || || |||||||| || Sbjct 961462 CGTGTTCCAATTCCTAACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGA 961403 Query 98854 GACGGTATAAACGACAGTCTAAAACAAGTGCCGGGATCTTTTGAGACGTTACAAAAATCG 98913 || || || |||||||| ||||| | | || ||| | | | || | |||| Sbjct 961402 GATGGCATCAACGACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCTCTTCAGAGATCG 961343 Query 98914 TGCGATAAGAGAGATGATTTCAAGGTGAGCATCCACGATATTTACGGTGCTCTACAGAAA 98973 ||| |||| |||||||| || || |||||| || | ||||| |||||| Sbjct 961342 TGCAGCGGCCGAGAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAAA 961283 Query 98974 CCACAACAGGG--TGTCTCCGATTATAACGAGCCTTACCGTGGCAATTTCGGACAGCTTA 99031 ||||| |||| ||||| | | ||||| |||||| ||||| || || ||||| | Sbjct 961282 CCACAGAAGGGATTGTCTTC--CTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGA 961225 Query 99032 TGGC---CATACGTAAACACAACCCACATCTAAAAATCCTACCCAGTATCGGTGGTTGGA 99088 || | || || || || || | || || |||||||| ||||||||||||| Sbjct 961224 TGTCTCTCAAAC---AAGCCAGGCCTGAACTTAAGATCCTACCTTCCATCGGTGGTTGGA 961168 Query 99089 CTCTTAGCGACCCCTTCTATTTTTTCGCCGATGATTACAAGCGCAAAGTGTTCGTAGACT 99148 | || ||| ||||||| || ||| |||| | | ||| | | ||||| || | Sbjct 961167 CACTAGCCGATCCCTTCTTCTTCTTCACCGACAAGGAGAAGAGAGATCGCTTCGTTGATT 961108 Query 99149 CGGTTCGTGAATTCCTACAGGTGTGGAAATTTTTCGACGGTGTAGACATCGACTGGGAGT 99208 | || || ||||| | ||||| || ||||| ||||| |||||||| ||||| | Sbjct 961107 CTGTAAAAGATTTCCTCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAAT 961048 Query 99209 TTCCTGGCGGAAAGGGGGCCAACCCTGAAGTAGGAAATCCTAATGAGGACGGAAACACTT 99268 | ||||| || ||||| || ||||| || | || | || | | |||||| | || Sbjct 961047 TCCCTGGAGGTAAGGGAGCTAACCCCGACCTCGGTAGCCCGA---AAGACGGAGATGTTT 960991 Query 99269 ATGTCACACTTCTGCAAGAGCTTCGTTTGATGCTTGACGAATTGGGTGTGGCCAATAAAC 99328 | || | | || | || | ||| ||| | |||| | || || | || Sbjct 960990 ACGTTGAATTAATGAAGGAATTGCGTGAAATGTTGAACGACCTTTCTG-----AAGAGAC 960936 Query 99329 GTGT-----TTACGAACTGACAAGTGCCGTGGGCGCCGGTTACGATAAAATCGACGTGGT 99383 || ||||| ||||| || | | || || | ||||| ||| | || || Sbjct 960935 CGGTAAGAAATACGAGCTGACCTCCGCTATCAGTGCTGGATGGGATAAGATCCAAGTTGT 960876 Query 99384 CGATTACTCTACAGCCAGTCAA---TATTTGGACCATGTGTTTTTAATGAGTTACGATTT 99440 ||||||| | ||| |||| ||| |||||||| | || | |||||||| ||||| Sbjct 960875 CGATTACAGTGAAGC---TCAAAAGTATATGGACCATATCTTCCTTATGAGTTATGATTT 960819 Query 99441 TAAAGGCGCCTGGTCCAACACCGACTTGGGTCATCAAACACCATTGTATGCACCATCGTG 99500 ||||||||||||||| ||| | | | |||||||| || ||| | || ||||| | || Sbjct 960818 TAAAGGCGCCTGGTCTAACGACACCCTCGGTCATCAGACTCCACTTTACGCACCCGCTTG 960759 Query 99501 GAACTCCGAAGAGAGATACACAACCGATTATGCGGTTAAACAGCTATTAAAGAAAAAAGT 99560 |||| | | || | || || || || | || || ||| | | | || || Sbjct 960758 GAACCCTAAGGAAACTTATACCACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGCGT 960699 Query 99561 GCCTTCTCACAAGATTGTAGTGGGAGTCGCCATGTACGGCAGAGGATGGAGTGGAGTGCA 99620 | || | |||||||| ||||| || || |||||||| | || |||| ||| || || Sbjct 960698 GAACCCTAAGAAGATTGTGGTGGGCGTAGCTATGTACGGACGCGGCTGGACTGGTGTTCA 960639 Query 99621 TGACTACAAAAATAATAACGTTTTTACGGGTGTGGCCACGGGACCGGTAAAAGGCACCTG 99680 | | ||| || | || || || || || || || ||||| || ||||| || || Sbjct 960638 TAATTACGAAGACAACAATCCATTCACTGGCAACGCGACTGGACCAGTCAAAGGTACTTG 960579 Query 99681 GGAAAACGGTGTTGTTGATTATAG 99704 | || ||||||| ||||| ||||| Sbjct 960578 GCAAGACGGTGTAGTTGACTATAG 960555 >seq593 Length=2014934 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||||||||| | |||| || | || |||||||| ||||||||||| | Sbjct 755143 TGCCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTG 755202 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || ||||||||||| || || || || | || ||||| || | | Sbjct 755203 AAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGG 755262 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| || ||| || | || | | ||||| | |||| Sbjct 755263 GAATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCA 755322 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | |||| ||||| || || || || |||||||||||||| || |||||| Sbjct 755323 CCTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCATT 755372 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||||||||| |||||||| || || || || | || || ||||| ||||| || || | Sbjct 754726 CCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGA 754785 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| | ||||||||| | || | | |||||||| |||||| ||| | || Sbjct 754786 TCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCT 754845 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| | ||| || || | ||||| || ||||| ||||| |||||||||| Sbjct 754846 CGATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTTAACAA 754905 Query 46584 AGATTTGCAT 46593 |||| ||||| Sbjct 754906 AGATCTGCAT 754915 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| || |||||||| | ||||| | || || | ||| || |||||||| Sbjct 755637 TCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAG 755696 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | || ||||||||| |||||| ||| | || Sbjct 755697 ATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTTGCCTTAACATTC 755756 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||||| |||| |||||||| ||||| |||| || || ||| Sbjct 755757 TCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCACA 755816 Query 46583 AAGATTTGCATTTTG 46597 || || ||||| ||| Sbjct 755817 AAAATCTGCATCTTG 755831 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || || || || | || || ||||| ||||| || || Sbjct 754953 TCCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAG 755012 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | || || ||| |||||| |||| || Sbjct 755013 ATCAATCTCTGCTGGTCTGGGGGGATACCTTCTTTATCCTGGATCTTGGCTTTGACATTC 755072 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || | ||| || |||| |||||||| ||||| |||| || || || Sbjct 755073 TCAATGGTATCAGAAGGTTCAACCTCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACG 755132 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 755133 AAAATTTGCAT 755143 >seq1964 Length=1360 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||| | ||| |||||| ||||| ||||||||||| || || || | Sbjct 263 ACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACC 204 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | |||||||||||| || || | || |||||||| | || | | ||||| Sbjct 203 ATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTT 144 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||| | || | | ||||| | ||| || || | ||||| Sbjct 143 GTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGAT 84 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| ||||| || || || ||||| ||||| Sbjct 83 TGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 48 >seq2316 Length=6356476 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || ||||||| | | |||||||| || | ||| ||||| ||||| ||||||||| Sbjct 2659574 TTACCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCG 2659515 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || | || || | || || | ||| ||||||||||| ||||| | ||||| || | Sbjct 2659514 GACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGG 2659455 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || ||| ||||| || ||| || | | | | ||||| | ||| Sbjct 2659454 GGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCA 2659395 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || | ||| |||||||| ||||| || ||||| || ||||| |||||| Sbjct 2659394 ACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 2659344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565211028330480