Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3650 275 4e-69 seq2316 100 2e-16 >seq3650 Length=1334389 Score = 275 bits (304), Expect = 4e-69 Identities = 799/1214 (66%), Gaps = 37/1214 (3%) Strand=Plus/Plus Query 5821 CCAA-ACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCACGCA 5879 |||| ||| ||||||| |||||||| || ||||| ||||| ||||| || |||||||| Sbjct 960324 CCAAGACCCATGTTCATGGCATTTAATAGTTCACCATTGTCTGCGTCGATCTCCCACGCG 960383 Query 5880 AATAAACCACCCAA---ATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGA 5936 ||||||||||| | |||||| || || |||||| ||||| | | |||| | Sbjct 960384 AATAAACCACCAAGCTTATTTTTTCTAAC---ATACTTGCCTTTCTCAATAGTCGATCGT 960440 Query 5937 TCGTTGTCGTACGTAACTAAATCATTATT--ATCGT----AGACGTACGGAGATTGTGCA 5990 | || || ||||| | ||| ||| | | || | | ||||| |||| | ||| Sbjct 960441 GCATTATCATACGTTATTAAGTCACCAGTCGATGGCCTGAACACGTAAGGAGCCTCAGCA 960500 Query 5991 ATGTTATCATA---GAATTGTACACTTTCGTCGTAC---CT-ATTTACAATATCTTTATA 6043 | ||||| || ||||| || || | | || || | | || || |||| Sbjct 960501 ACATTATCGTAATGGAATTCC-CATTTACCCAAAGCAATCTCATGTGCTATTGCTCTATA 960559 Query 6044 ATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACGG 6103 || | ||| ||| || ||| |||||||| || || | | || | || || || || Sbjct 960560 GTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGTGAATGG 960619 Query 6104 ATTATTGTTTTCGACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTAC 6163 ||| |||| |||| ||| ||||| ||||||||||||| |||||||| || || || Sbjct 960620 ATTGTTGTCTTCGTAATTATGAACACCAGTCCAGCCGCGTCCGTACATAGCTACGCCCAC 960679 Query 6164 TACTAATTTAGTCGAATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGTTGT 6223 || | || | | | || |||| | ||| || | | |||| | || || Sbjct 960680 CACAATCTTCTTAGGGTTCACGCCTTGAGCAAGCAAATATTTCACACCAAAGTCAGTGGT 960739 Query 6224 GTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTTTC 6283 ||| |||| ||| || ||| | || |||||||| || || ||| ||| | | || Sbjct 960740 ATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGATGACCGAGGGTGTC 960799 Query 6284 CATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGTTG 6343 | ||||| |||||||||||||| || |||| | || |||| || | ||| ||| Sbjct 960800 GTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCATATACTTTTG 960859 Query 6344 CGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTTAG 6403 || || | ||||||||||| | ||| || || | || |||| ||||||| || || Sbjct 960860 AGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCGGAGGTCAG 960919 Query 6404 TTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTTTAA 6463 | || ||||| ||| || | | ||| | |||||| || || ||||| | Sbjct 960920 CTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCACGCAATTCCTTCAT 960979 Query 6464 AAGT--ATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACCT 6521 | | | ||| | | | | || | | | || || ||||| || || Sbjct 960980 TAATTCAACGTAAACATCTC-----CGTCTTTCGGGCTACCGAGGTCGGGGTTAGCTCCC 961034 Query 6522 TTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAAA 6581 ||||| || || || |||||||| ||||| || || ||||| || ||||| || | Sbjct 961035 TTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTCAAGAGG 961094 Query 6582 AATTCGCGCACACTATCAACAAACGTATTTCGTTTTTCGACGTCGTTTAACTGGTAAAAC 6641 || || ||| |||||| || || || || || |||| | || | | || Sbjct 961095 AAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTGTCGGTGAAGAAGAAGAAG 961154 Query 6642 GGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGGCGC 6701 |||||| || ||||| || || || || || | || | | || || || | Sbjct 961155 GGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTTCAGGCCTGGCTTGT 961214 Query 6702 TTGATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCGACA--C 6759 |||| | ||| | ||| |||||||| |||||||| |||||||| ||| |||| | Sbjct 961215 TTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAA--GACAATC 961272 Query 6760 CTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCTTTTC 6819 | || |||||||| ||||| || |||| ||| ||||| | |||||||||||||| || Sbjct 961273 CCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTTGAAATCTTCTC 961332 Query 6820 GGCCGGCGCACGATTTTTGCAACGCCT-CAAACGAACTGGGTATTTGTTGTTTAAGCGCA 6878 ||||| ||||||| | || | || | |||| || | || | | ||||||| Sbjct 961333 GGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCG-ATCTCT--TTTAAGC-TG 961388 Query 6879 TCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAGATTA 6938 ||||| | ||||| || || |||||||| || || ||||| | ||||| || || ||| Sbjct 961389 TCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGTCAGGTTA 961448 Query 6939 GGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAAGTAA 6998 ||||| |||| ||| | || ||| ||| ||| ||||||||||| || ||||| Sbjct 961449 GGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTACGAAGTAT 961508 Query 6999 GCGCCCACAACATT 7012 || || ||||| || Sbjct 961509 GCTCCAACAACTTT 961522 >seq2316 Length=6356476 Score = 100 bits (110), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 39486 ATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCT--TTCTTTTTGTATATTA 39543 ||||| || ||||||| | || ||||| || ||||| | ||| || || || || Sbjct 2659578 ATCATTACCTCCTCGCAGCCTCAACACCAAGTG--AAGTGTTGATTCCTTCTGGATGTTG 2659521 Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 || |||| ||| ||| |||| || || ||||| ||| | || || || | |||||| Sbjct 2659520 TAGTCGGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGA 2659461 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCG 39663 || | ||| | ||| |||||||| ||||| ||| | | | | ||||| | | Sbjct 2659460 TCTGGGGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAG 2659401 Query 39664 CTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || || || || ||||||||||| | |||||||||||||||||||| Sbjct 2659400 GCTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347353199161442