Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3650 165 8e-36 seq348 145 8e-30 seq2316 129 6e-25 seq593 129 6e-25 seq1964 118 1e-21 seq3450 91.5 1e-13 seq802 89.7 5e-13 >seq3650 Length=1334389 Score = 165 bits (182), Expect = 8e-36 Identities = 346/507 (68%), Gaps = 8/507 (2%) Strand=Plus/Plus Query 62212 GGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTCGAACAGCTTC 62271 ||||| || ||||| || || || || ||||| || | ||| | || ||||| | |||| Sbjct 961023 GGGTTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTC 961082 Query 62272 CACGTCTGCAGAAACTCGCGCGCCGACTCGACGAACGCGCGC-CGCGCGTTCGCGTCG-T 62329 || ||| || || || | || || ||||| ||| | | | | | |||| | Sbjct 961083 CAGGTCAAGAGGAAATCTTTTACAGAATCAACGAA-GCGATCTCTCTTCTCCTTGTCGGT 961141 Query 62330 GCATATGGTAAAACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCAGGT 62389 | | | | | || ||||||| || ||||| || |||||||| || || | | | || Sbjct 961142 GAAGAAGA-AGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGAT-CTTAAGT 961199 Query 62390 GCGGG--TGCGCTTTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCT 62447 | || || |||| |||| | |||||||||||| |||||||| ||||| || ||| | Sbjct 961200 TCAGGCCTG-GCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTT 961258 Query 62448 CCACGCGGTCACGCCCTTTTGCGGCTTTTGCACGGCCGCCCACGGGTCGTGCACCGCCAG 62507 ||| | | || ||||| || || || || | || ||||| || ||||| | | | Sbjct 961259 CCAGGAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATAC 961318 Query 62508 TTTGAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGA 62567 |||||| || || ||||| |||||| | ||| || || | ||| ||||| |||| Sbjct 961319 TTTGAAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTC 961378 Query 62568 CTTGAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATG 62627 || | ||||||||||||||| || || ||||| || || | ||||||||| || | ||| Sbjct 961379 TTTTAAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATG 961438 Query 62628 CGTGAGGTTGGGCACGGGCACCTTGTCGGCGGGAAACTCGCGTCCGTACACGCCCCACTC 62687 || ||||| || | || || ||| | || || | | |||||| ||||| || Sbjct 961439 AGTCAGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTC 961498 Query 62688 GACGAAATAGGCGCCCACCACCTTGCC 62714 ||||| || || || || || || || Sbjct 961499 TACGAAGTATGCTCCAACAACTTTTCC 961525 >seq348 Length=4065129 Score = 145 bits (160), Expect = 8e-30 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| ||||| ||||| ||||| |||||||| ||||| |||||||| | ||| || || | Sbjct 3297633 CCTCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCT 3297574 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | ||| ||||| | || ||||| || |||||||||| ||| || || ||||| || | Sbjct 3297573 TCAACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATG 3297514 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | | ||| || || | ||| |||||||||||||| | | ||||| || | Sbjct 3297513 CAACTATCCTCTCTCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTCTG 3297454 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 |||||| ||| || || || | || || ||||| || ||||| Sbjct 3297453 CCTTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAACAA 3297411 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 |||||||| || |||||||| |||||||| || ||||| || ||||||||| ||| || Sbjct 3297217 GAATACATCTCAGAGTGTACATTCTCCATAGCAATTTGGAATCCGTAAAAGAACCTTGCT 3297158 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || | | || |||||||| | || ||||| ||||||||||| || || || || ||| Sbjct 3297157 TCACCAATTTGAACTTCTTGTGAAAATCGCTCTACCAGATTTTCATTAACAATACCATCG 3297098 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 ||| || ||||| |||| || || || || ||||| | ||| ||| || || | Sbjct 3297097 GAGGCAGCAAAAAACGCCAAGACATGTTTTATAAAATGCCTCTCACAGTCCTTTAAACTT 3297038 Query 133366 TCCCAGTC 133373 ||||| || Sbjct 3297037 TCCCAATC 3297030 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 132706 CCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCG 132765 || ||||| || || ||||| ||||| || || ||||| ||||| |||||||| ||| Sbjct 3299188 CCAATCAGATCCACAAGCAGTCTGTCAGCAACAAACTCAATGTACTGCGACATAAGTTCA 3299129 Query 132766 CAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 || || | || || || || || |||||||| || || || || ||||| || || Sbjct 3299128 CAGTTCATGCCGAGGAGCCGTACAGGCAGCGCGTCAGTCAGGAACTCCTGCTCAATAGCA 3299069 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 ||||| || ||| || | | |||||| || ||||||| ||||| | |||||| Sbjct 3299068 ACCGCATCCTTGATGACCTGCAGCACGCGCTCCTTGCTCGGCTTCTGCACTAGGTGCTTG 3299009 Query 132886 AACATCAAGCAAGCAAAGTC 132905 ||||||| ||| || ||||| Sbjct 3299008 AACATCAGGCATGCGAAGTC 3298989 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 133382 CCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATAC 133441 ||||||| || || || ||||| || ||||| || || || || || ||||||||||| Sbjct 3296938 CCTTGGATAGATCAACTTCCTCCACTGTCCAGAATGAAGCTTCTGCCTTTTTGTACATTT 3296879 Query 133442 TCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACA 133501 ||| || || | |||||| ||||| || || || || || || || ||||| ||||||| Sbjct 3296878 GCCAGATATCAGGATATTGGATGGGGAAGATGACGAAACGCCGAGGATTTTCACGCAACA 3296819 Query 133502 GCGGCTCC 133509 | || ||| Sbjct 3296818 GTGGTTCC 3296811 >seq2316 Length=6356476 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || ||||||||||| |||||||| |||||||| || | || || || || Sbjct 2659341 AACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGC 2659400 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | | |||| | ||| | |||| ||||| | ||||||||||| |||||| | || Sbjct 2659401 CTCTGACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCCCCAGA 2659460 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || | || | ||| ||||||||| | || || | || || | |||||| Sbjct 2659461 TCAGCAAAGGTTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCCGACTA 2659520 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| |||||| | || || || |||||| || | || |||| || Sbjct 2659521 CAACATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTGCGAGGAGG 2659571 >seq593 Length=2014934 Score = 129 bits (142), Expect = 6e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 38236 TTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 38295 |||| || ||||| || || || || || | || ||||| ||||||||| | || || | Sbjct 755835 TTAACAAGATGCAGATTTTTGTGAAGACATTGACAGGCAAGACCATCACCTTGGAGGTGG 755776 Query 38296 AGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCG 38355 || | | |||| | | | |||| | ||| |||| ||||| ||||| |||||| Sbjct 755775 AGCCTTCAGACACAATTGAGAATGTTAAGGCAAAGATCCAAGACAAGGAGGGCATTCCCC 755716 Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 | ||||| ||||| ||||| | ||| || |||||| |||| || | ||||| | || Sbjct 755715 CAGACCAGCAGCGTCTCATCTTCGCCGGTAAACAGTTGGAAGATGGACGCACATTGTCCG 755656 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| ||||||||||||||| | || |||||||| || || ||| Sbjct 755655 ACTATAACATCCAAAAGGAATCCACCCTGCATTTAGTACTCCGT 755612 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||| ||||||||| | || || || | | Sbjct 755143 ATGCAAATTTTCGTGAAGACTTTGACAGGCAAGACCATCACCTTGGAGGTTGAACCTTCT 755084 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | |||| || |||| || ||||| || || ||| | ||||| Sbjct 755083 GATACCATTGAGAATGTCAAAGCCAAGATCCAGGATAAAGAAGGTATCCCCCCAGACCAG 755024 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || ||||||||||| || || | || ||||| ||||||||| Sbjct 755023 CAGAGATTGATCTTTGCTGGCAAACAGCTAGAGGATGGCCGTACCCTTTCTGACTACAAC 754964 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || || ||||| || ||| || |||| || Sbjct 754963 ATCCAAAAGGAATCAACACTTCACTTGGTACTCCGTCTGCGAGGTGG 754917 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| | || || ||| | | Sbjct 755599 ATGCAGATCTTCGTTAAGACCTTGACAGGCAAGACTATCACATTAGAGGTTGAGCCATCT 755540 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||| | ||||||| |||||||| || |||||| | ||||| Sbjct 755539 GACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 755480 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || ||||||||||| || || | ||||| | || |||||| Sbjct 755479 CAGAGATTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACATTGTCAGATTACAAC 755420 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || || || ||||| ||| | ||||| || Sbjct 755419 ATCCAGAAAGAATCTACTCTTCACTTAGTGCTCCGTCTTAGAGGAGG 755373 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| || ||||| | || || || || | Sbjct 754915 ATGCAGATCTTTGTTAAAACCCTGACAGGCAAGACTATCACATTAGAAGTAGAACCCTCG 754856 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| ||||| || || || ||| | ||||| Sbjct 754855 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 754796 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || ||||||||||| || || | || ||||| ||||||||| Sbjct 754795 CAGAGATTGATCTTTGCTGGCAAACAGCTAGAGGATGGCCGTACCCTTTCTGACTACAAC 754736 Query 38424 ATCCAAAAGG 38433 |||||||||| Sbjct 754735 ATCCAAAAGG 754726 >seq1964 Length=1360 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || |||||||| |||||| | || || || || | Sbjct 48 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAAACAATCACCCTAGAAGTTGAACCCTCG 107 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| ||||| || || || || | ||||| Sbjct 108 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 167 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || ||||| ||| |||| || | || || ||| |||||||||| Sbjct 168 CAACGTCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGTCGTACACTCTCCGACTACAAC 227 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || || ||||||||||| ||| | | |||||| Sbjct 228 ATCCAGAAGGAGTCTACTCTTCATTTGGTGCTTCGTCTCCGCGGCGGC 275 >seq3450 Length=502752 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 107663 CTTGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCGCCGTGGTCGCG 107722 || || |||||| || |||||||| || | | |||| |||||||||||| || | Sbjct 192354 CTCGATGTTGCCGAGATCGCCGACATGGCGCACGGTGGCGGTGGGCGCGCCGTGCTCCTG 192413 Query 107723 CTTCGTCGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTC 107782 |||| |||||||| || ||||||| |||||||||||||| | ||| || ||||| Sbjct 192414 CTTCCCTGGGTTGAAGTGTGCGCCGGCGGACGTGCAGCCGTTTGTGTTGTCACCAAACTC 192473 Query 107783 GTGCACGTGGAAGCCGTG 107800 ||||| ||||| || || Sbjct 192474 ATGCACATGGAAACCATG 192491 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 107484 CCGCACGCGAGCCGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAACGGATGGTCGGTGAGG 107543 ||||| |||| || |||||| |||||||||||||||||| | | ||| || || | Sbjct 191680 CCGCAGGCGATGCGCGCGCCCGCGTTGCCGGTGGTCTTGCTGAGCTCGTGGCCGCCGATG 191739 Query 107544 CCCAGATCGTCCCTGTCCGTGTGCACGACCAGACTCCGTCCGATGATGCTGTGCGGGCC 107602 || || ||||| ||||| |||||| ||||| | || ||||| ||||||| ||| || Sbjct 191740 CCGAGGTCGTCGGGGTCCGCGTGCACCACCAGCGTGCGCCCGATTATGCTGTTCGGTCC 191798 >seq802 Length=1346568 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| |||||||||||| |||| || || || Sbjct 833294 AAGATGCAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTTGAACCC 833235 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | ||| | |||| |||||| | |||||||||||||| || | ||| Sbjct 833234 TCGGATACCATTGAAAATGTCAAAGCAAAAATTCAAGACAAAGAGGGAATCCCTCCAGAC 833175 Query 38361 CAACAGCGG 38369 || ||| || Sbjct 833174 CAGCAGAGG 833166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500148579132160