Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq336 205 4e-47 seq2205 190 8e-43 seq2316 138 4e-27 seq593 118 4e-21 seq763 96.9 1e-14 seq1872 93.3 2e-13 seq802 89.7 2e-12 >seq336 Length=3672263 Score = 205 bits (226), Expect = 4e-47 Identities = 467/694 (67%), Gaps = 14/694 (2%) Strand=Plus/Minus Query 450920 GGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAA 450979 || |||||| | ||||| || | ||| ||||| || | | ||| |||| || ||||| Sbjct 248791 GGTATTGATTTGGGAACAACATATTCCTGTGTGGGCGCGTGGCAACATGGTAACGTAGAC 248732 Query 450980 ATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTCA 451039 || || ||||| || |||||| || || ||||| || | || || || || | Sbjct 248731 ATAATTGCAAACGATCAAGGAAACCGCACAACTCCGTCTTATGTTGCGTTCACTGACACC 248672 Query 451040 GAAAGACTTTTAGGGCAAGCTGCTAAATCAAT--GGTAAATTCAAATGCCAAAAACACAG 451097 ||| | || |||| | || || ||| ||| |||| || | | || || Sbjct 248671 GAACGGCTCATAGGAGATGCAGCCAAA--AATCAGGTAGCCATGAACCCTGATAATACTA 248614 Query 451098 TATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGA 451157 | | ||||| || ||||| ||||| |||| |||||||||| ||||||||| |||| | Sbjct 248613 TTTTCGATGCCAAGCGTTTGATTGGACGTAAGTATGATGATCCTACTGTACAGCAAGACA 248554 Query 451158 AAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATT 451217 ||| | | | | | || || || | || || || || | ||||||||| | Sbjct 248553 TAAAGCATTGGCCCTTTAAAGTTGTCAACGATAACGGGAAACCTAAAATTCAAGTATCGT 248494 Query 451218 ATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTT-CATCTATGGTTCTTACTAAA 451276 |||||| || | ||| || |||| || ||| | || | ||||| |||||||| Sbjct 248493 TTAAAGGAAAAGCAAAAGTGTTCACTCCAGAGGAAGTAAGCAGC-ATGGTG-TTACTAAA 248436 Query 451277 A-TGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGT 451335 | ||||||| ||||| ||| |||| | || ||| ||| | ||||| ||||| || Sbjct 248435 AATGAAAGAGACAGCTGAATCATATCTAGGCAACAAAGTAACTAAAGCAGTTATTACAGT 248376 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395 || ||||| |||||||| | || | ||||| ||||||||||| || |||||| || Sbjct 248375 ACCTGCTTACTTCAATGACTCTCAGAGACAAGCTACTAAAGATGCGGGTGCTATTGCCGG 248316 Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGG 451455 ||||| ||||| |||| |||||||| || || || || ||| | || || || || | Sbjct 248315 ATTAAACGTTCTCAGAATAATTAATGAGCCAACGGCTGCAGCTTTGGCTTACGGCCTTGA 248256 Query 451456 AAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCA 451515 || || || || |||| || | ||| | |||||||| || || || ||| Sbjct 248255 TAA---GAATTTAAAAGGAGAACGCAAAGTCTTAATCTTTGATTTAGGAGGCGGTACTTT 248199 Query 451516 TGATACTTCTGTACTTTCAATTGAAGATGG---GGTATTTGAAGTAAAGGCAACCAATGG 451572 |||| || | ||| | ||||| || || | ||||||||||| || || || Sbjct 248198 TGATGTATCCATCCTTACGATTGATGAAGGTTCTCTTTTTGAAGTAAAAGCTACAGCCGG 248139 Query 451573 TGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || |||||||| || ||||||||| |||| ||| Sbjct 248138 AGACACTCATCTTGGTGGTGAAGATTTTGACAAT 248105 >seq2205 Length=3731788 Score = 190 bits (210), Expect = 8e-43 Identities = 268/375 (71%), Gaps = 6/375 (2%) Strand=Plus/Plus Query 451231 TAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGC 451290 ||||| ||| | |||||||||||||| || ||| |||| | ||||||||| ||||||| Sbjct 2069734 TAAAAAGTTTACGCCTGAAGAAATTTCCTCCATGATTCTAAGCAAAATGAAACAAACAGC 2069793 Query 451291 AGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAA 451350 ||| ||| | || | | || |||||||| || |||||||| || || ||||| || Sbjct 2069794 TGAAATGTATCTCGGAGGTACTGTCACTGATGCGGTTATTACTGTACCGGCATATTTTAA 2069853 Query 451351 TGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCG 451410 || | ||||| ||||| |||||||| |||||| ||| |||| || ||||||||| | Sbjct 2069854 CGACTCTCAACGACAAGCGACTAAAGACGCAGGAGCGATTACTGGATTGAATGTTCTTAG 2069913 Query 451411 AATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC 451470 ||||||||| ||||| ||||| || ||||| || ||||| ||| || | | || Sbjct 2069914 AATTATTAACGAACCAACAGCCGCCGCTCTCGCTTATGGCTTAGACAA---AGATTTAAA 2069970 Query 451471 AGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACT 451530 || || || ||| | || ||||||| |||| || || ||| || ||| |||| Sbjct 2069971 AGGTGAGAAGAATGTACTAATATTTGACCTTGGCGGTGGTACTTTCGACGTTTCGATACT 2070030 Query 451531 TTCAATTGAAGATGG---GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGG 451587 | ||| ||| || | || |||||||| |||| ||||| ||||| || || Sbjct 2070031 TCAGATTTCAGAAGGATCATTGTTCGAAGTAAAATCAACAGCAGGTGACACTCACCTTGG 2070090 Query 451588 AGGTGAAGATATTGA 451602 ||| || ||| |||| Sbjct 2070091 AGGCGAGGATTTTGA 2070105 >seq2316 Length=6356476 Score = 138 bits (152), Expect = 4e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| ||||| || || |||||||| || || | || |||||| | || Sbjct 2659344 AATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTC 2659403 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | | ||| ||||||||||| || || || ||||| || ||||| Sbjct 2659404 TGACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCCCCAGATCA 2659463 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | || || ||| | || ||||| | ||||||||| | || ||| | || || || Sbjct 2659464 GCAAAGGTTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCCGACTACAA 2659523 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| ||||||||||||| || || || ||| ||||| Sbjct 2659524 CATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTGCGAGGA 2659569 Score = 96.9 bits (106), Expect = 1e-14 Identities = 303/468 (65%), Gaps = 12/468 (3%) Strand=Plus/Minus Query 501060 TTTGCTTTCTATTTAGAACCTCATCATGCGGATATATTTGATTTTTTGGAACTACGAAAA 501119 |||||| | || |||||||| || | ||| | ||||| ||||| || || ||| Sbjct 2966569 TTTGCTATTTACTTAGAACCCTGGCACTCTGATGTGTTTGAGTTTTTAGATCTGAAAAAG 2966510 Query 501120 AATACTGGTGCCGAATCAGAAAGAGCCCGTGATTTATTTTTAGCATTATGGGTTTCTGAC 501179 |||||||| ||| || |||||| | || |||||| ||||||||| | | || Sbjct 2966509 AATACTGGCAAAGAAGAAGTCAGAGCCAGAGAACTATTTTATGCATTATGGATCCCAGAT 2966450 Query 501180 TTATTTATGAATCAGGTTAAATTAAAT--AATGATTGGTATTTATTTTGTCCAGACAAAG 501237 || |||||||| | ||| || | || |||| ||| |||| | || || | | Sbjct 2966449 TTGTTTATGAAGCGTGTTGAAAAAGATGAAATG--TGGAGTTTAATGTGCCCTCATGATT 2966392 Query 501238 CACCAGGATTAAATGA-TGTATATGGAGATGAATATGAAACTCTTTATTGGAAATATGTA 501296 || || | || ||| | ||||| |||| |||| | | ||| || |||||| | Sbjct 2966391 GCCCCGGTCTTGCCGACTGT-TGGGGAGAAGAATTTGAAGCATTATATGGGCAATATGAA 2966333 Query 501297 TCAGAAGAAAAATNNNNNNNNNNNNNNAAAGCCCGGAAATTATGGGAAGCTATAATGACA 501356 ||| | | || ||| | || | ||| |||| || || | Sbjct 2966332 GAGGAAAAGAGATTTGTTAAGCAAGTCCGAGCTCAAGAACTGTGGAAAGCAATCATAGAA 2966273 Query 501357 GCACAGTTTGAAACTGGTTCACCCtatatgttatataaagataatattaataaaaaatca 501416 ||||| | ||||| || |||| |||||||||||||||||| | ||| | |||| Sbjct 2966272 GCACAAGTGGAAACAGGCACACCATATATGTTATATAAAGATTCTTGTAACAGAAAAAGC 2966213 Query 501417 aaccagaaaaatataggaataatTAGAAGTTCAAATTTATGTGCTGAAATTGTAGAATA- 501475 || || |||||| | || | |||| | | ||||| || | |||||||| ||||| Sbjct 2966212 AATCAAAAAAATCTTGGCACCATTAAATGCAGTAATTTGTGCACAGAAATTGTTGAATAC 2966153 Query 501476 --TTCAGATTCTACTGAAACAGCTGCTTGTAATTTAGCTTCAATTGCT 501521 ||||| | |||| |||| ||||||||||||||| |||||| Sbjct 2966152 ACTTCAG---CAGATGAAGTTGCTGTTTGTAATTTAGCTTCTATTGCT 2966108 >seq593 Length=2014934 Score = 118 bits (130), Expect = 4e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || |||| || || ||||| || | || ||||| ||||| Sbjct 755599 ATGCAGATCTTCGTTAAGACCTTGACAGGCAAGACTATCACATTAGAGGTTGAGCCATCT 755540 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | |||| ||||| ||||| || ||||| ||||| || || || Sbjct 755539 GACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 755480 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || ||||| |||||||||||| | || ||| | ||||| || Sbjct 755479 CAGAGATTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACATTGTCAGATTACAAC 755420 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACAttttttt 391289 || | || || | || ||||||||||| | | || |||||| ||| || ||||| Sbjct 755419 ATCCAGAAAGAATCTACTCTTCACTTAGTGCTCCGTCTTAGAGGAGGAATGCAGATTTTT 755360 Score = 109 bits (120), Expect = 2e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| |||||||| || || || || ||||| || || || || || |||| Sbjct 755372 AATGCAGATTTTTGTTAAAACGCTAACAGGAAAGACTATCACACTGGAGGTGGAGCCATC 755313 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | | ||| ||||||||||| ||||| || ||||| || ||||| Sbjct 755312 AGACACAATTGAGAATGTAAAAGCGAAAATTCAAGACAAGGAGGGCATTCCCCCAGATCA 755253 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||||| | || || | || || || || |||||||| | || | | || || || Sbjct 755252 GCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCAGACTACAA 755193 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 |||| | ||||| | || |||||||| || Sbjct 755192 TATTCAAAAGGAATCGACGCTTCACTTGGT 755163 Score = 89.7 bits (98), Expect = 2e-12 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || || || || || | || |||||| | ||| Sbjct 755143 ATGCAAATTTTCGTGAAGACTTTGACAGGCAAGACCATCACCTTGGAGGTTGAACCTTCT 755084 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| || || || ||||| ||||| || || || || || Sbjct 755083 GATACCATTGAGAATGTCAAAGCCAAGATCCAGGATAAAGAAGGTATCCCCCCAGACCAG 755024 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || ||||| || || ||||| | || | | || || || Sbjct 755023 CAGAGATTGATCTTTGCTGGCAAACAGCTAGAGGATGGCCGTACCCTTTCTGACTACAAC 754964 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| ||||||||||||| ||| | | ||| |||| Sbjct 754963 ATCCAAAAGGAATCAACACTTCACTTGGTACTCCGTCTGCGAGG 754920 >seq763 Length=6614576 Score = 96.9 bits (106), Expect = 1e-14 Identities = 259/393 (66%), Gaps = 5/393 (1%) Strand=Plus/Minus Query 451205 ATTCAAGTAAATTATAAAGGTGAA-ACTAAAACTTTTGCTCCTGAAGAAATTTCATCTAT 451263 ||| ||||| || ||||||||| || | | ||| | | ||||||||| | || || Sbjct 6225247 ATTAAAGTATCATACAAAGGTGAAGACAAGACCTTCTTC-CCTGAAGAAGTGAGCTCAAT 6225189 Query 451264 GGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGC 451323 ||| ||||| || ||||| |||||||| || || | ||| | || |||| Sbjct 6225188 GGTGCTTACGAAGATGAAGGAAACAGCCGAGGCCTACCTCGGTAAAACGGTGCAGAATGC 6225129 Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383 |||||| || ||||| || || ||||| || ||||| | || || ||||||||||| || Sbjct 6225128 AGTAATCACGGTTCCAGCGTACTTCAACGACTCACAAAGACAGGCCACTAAAGATGCGGG 6225069 Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443 || |||| | |||||||| || || || || || || || || ||||| | || Sbjct 6225068 TACCATCTCTGGCCTCAATGTTCTCCGGATCATCAACGAGCCGACTGCTGCTGCGATTGC 6225009 Query 451444 ATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503 || || || | || || | | | |||| ||| | | | || ||| | || Sbjct 6225008 GTACGGTCTTGACAA---GAAGGGAGGTGGAGAACGTAATGTACTTATTTTCGATCTCGG 6224952 Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGC 451563 || || ||| |||| ||| | || | || || ||||| | || || || || | Sbjct 6224951 CGGTGGTACTTTTGATGTGTCTATCCTGACTATCGAGGATGGCATCTTCGAGGTGAAATC 6224892 Query 451564 AACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||| ||||| ||||| | |||||||| || Sbjct 6224891 TACCGCCGGTGACACTCACTTGGGAGGTGAGGA 6224859 >seq1872 Length=2557183 Score = 93.3 bits (102), Expect = 2e-13 Identities = 140/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 451318 TGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA 451377 ||||| ||| || || |||||||| ||||| || ||| ||| | || || |||| | Sbjct 760951 TGATGTAGTTATAACGGTTCCCGCGTATTTTAACGATTGTCAAAGACAGGCTACTAGGGC 760892 Query 451378 TGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||| ||| ||||||||||| || ||| | ||||| ||||||| || || |||||||| Sbjct 760891 TGCGGGAGTGATTGCTGGTTTTAACGTTTTAAGAATTGTTAATGAGCCAACCGCAGCTGC 760832 Query 451438 TCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGA 451497 |||| ||||| | ||| || || | || || || |||||| | || ||| ||| Sbjct 760831 GTTAGCTTATGG-TTTGGATAA-AAATATTAAGAG-TGAGAAAAATGTATTGATATATGA 760775 Query 451498 TTTTGGTGGAGGAAC 451512 ||| || || || || Sbjct 760774 TTTAGGCGGTGGCAC 760760 >seq802 Length=1346568 Score = 89.7 bits (98), Expect = 2e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || ||||| || || || || |||||| | || Sbjct 833291 ATGCAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTTGAACCCTCG 833232 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| | | ||| |||||||||||| || || ||||| ||||| || || Sbjct 833231 GATACCATTGAAAATGTCAAAGCAAAAATTCAAGACAAAGAGGGAATCCCTCCAGACCAG 833172 Query 391170 CA 391171 || Sbjct 833171 CA 833170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975620333982392