Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq593 168 1e-36 seq1964 145 2e-29 seq2316 120 7e-22 seq802 89.7 1e-12 >seq593 Length=2014934 Score = 168 bits (186), Expect = 1e-36 Identities = 164/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || || || |||||||||||||| || | ||| || | |||||||| Sbjct 755162 AACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAAAGTGTGCGACCATCTTC 755221 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||||||| || |||||||| ||||| || ||||| |||||||| || |||||||| Sbjct 755222 GAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTG 755281 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || || |||||||| ||||| || ||||| || || || | ||||| Sbjct 755282 AATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACCTCCAGTGTGATAGTCTT 755341 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||| | ||||| || || | |||||| Sbjct 755342 TCCTGTTAGCGTTTTAACAAAAATCTGCATT 755372 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || ||||| || ||||| || | ||| || | ||||| || ||||| Sbjct 754940 GTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTG 754999 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| | || || |||||||| || || |||||||| || || || || Sbjct 755000 TTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCTTTATCCTGGATCTT 755059 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| ||||||||||| || ||| ||| || || | ||| | ||||| ||||| Sbjct 755060 GGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACCTCCAAGGTGATGGTCTTGCCTGT 755119 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | |||||| Sbjct 755120 CAAAGTCTTCACGAAAATTTGCAT 755143 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || ||||| || || |||||||| | | || | |||||||| ||||| Sbjct 755396 GTGAAGAGTAGATTCTTTCTGGATGTTGTAATCTGACAATGTGCGTCCATCTTCAAGCTG 755455 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| | || || |||||||| |||||||||||||||||||| ||||| Sbjct 755456 TTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATTTT 755515 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || ||||| ||||| || || || || | || | ||||| ||||| Sbjct 755516 AGCCTTAACATTTTCAATTGTGTCAGATGGCTCAACCTCTAATGTGATAGTCTTGCCTGT 755575 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 755576 CAAGGTCTTAACGAAGATCTGCAT 755599 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || ||||| || | ||| || | ||||| || ||||| || || || ||||| Sbjct 754728 TTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATC 754787 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || || |||||||| || || ||||| |||||||| || || ||| || ||||| Sbjct 754788 AATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCG 754847 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||||||||||| ||| ||||| | || | ||||| ||||||| ||||| || || Sbjct 754848 ATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTTAACAAAG 754907 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 754908 ATCTGCAT 754915 >seq1964 Length=1360 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||| || || || ||||| |||| || || | ||||| || | |||| Sbjct 250 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACCATCCTCCAACTGC 191 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || ||||| ||||||||||| || ||||| |||||||| || || Sbjct 190 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTG 131 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || ||||| ||||||||||| ||| ||||| ||||| | || || || ||| Sbjct 130 GCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTGTTTTGCCAGTC 71 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 70 AGAGTCTTGACGAAGATCTGCAT 48 >seq2316 Length=6356476 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || ||||| || | |||||| || || || || || || ||||| |||| | || | Sbjct 2659562 AGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGT 2659503 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||| || || |||||||| | | ||| || ||||| |||||||| ||| Sbjct 2659502 CCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGGAATGCCCTCT 2659443 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| || || || ||||| ||||| || ||| || || | || Sbjct 2659442 TTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAACCTCTAACGTT 2659383 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||||||||| | |||||| Sbjct 2659382 ATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 2659344 >seq802 Length=1346568 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || ||||||||||| || || |||||||||||||||||| ||||| || |||||||| Sbjct 833170 TGCTGGTCTGGAGGGATTCCCTCTTTGTCTTGAATTTTTGCTTTGACATTTTCAATGGTA 833229 Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138 ||||| ||| || || ||||| | || || || || | ||||| ||||| | ||| Sbjct 833230 TCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATCTGC 833289 Query 195139 AT 195140 || Sbjct 833290 AT 833291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109426530187358