Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3650 150 1e-31 seq2316 138 7e-28 seq1964 98.7 6e-16 seq593 96.9 2e-15 >seq3650 Length=1334389 Score = 150 bits (166), Expect = 1e-31 Identities = 628/982 (64%), Gaps = 13/982 (1%) Strand=Plus/Plus Query 5564 GCTATGTTTCTATAATCCACCACACCGTTTTCCCAGGTGCCGGCAATCTTGTCG-GTCGC 5622 ||||| |||||| || || ||||||| || ||| || || | || ||| ||||| Sbjct 960546 GCTATTGCTCTATAGTCAACTACACCGTCTTGCCAAGTACCTTTGA-CTGGTCCAGTCGC 960604 Query 5623 CACACCGGTAAATACATTATTGTTCACCTGGTCGTGCACTCCGGACCACCCACGACCGTA 5682 || || ||| ||| |||| | | | || || || | ||| || || ||||| Sbjct 960605 GTTGCCAGTGAATGGATTGTTGTCTTCGTAATTATGAACACCAGTCCAGCCGCGTCCGTA 960664 Query 5683 CATGGCTACACCCACAATTAGCTTCTTCGATTCGACGCTCTGATTTAACAGACGCTTGAT 5742 ||| ||||| ||||| | | |||||| | | |||| ||| | || | || | Sbjct 960665 CATAGCTACGCCCACCACAATCTTCTTAGGGTTCACGCCTTGAGCAAGCAAATATTTCAC 960724 Query 5743 TGAAAAATCTGTCGTGTATGTCTCGCCTGGGTTCCACGATGGAGCGTACAGAGGTGTCTG 5802 ||| || || || || || || |||||||| | || ||||| || || ||||| Sbjct 960725 ACCAAAGTCAGTGGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTG 960784 Query 5803 GTGTCCCAGATC--CGTTAACGACCAGGCACCCTTGTAGTCGTACGTCATAACAAAGATG 5860 || || || ||||| |||||||| || || | || || |||||| ||||| Sbjct 960785 ATGACCGAGGGTGTCGTTA--GACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATA 960842 Query 5861 TGATCAAGATACCTTTGTGCGCTGGCGTAGTCGACAACGTCGATCTTGTCATGTCCCGCG 5920 || || | |||| |||| || ||| |||||||| | |||||| || ||| || Sbjct 960843 TGGTCCATATACTTTTGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCA 960902 Query 5921 CCGATAGCACTTGTCAATTGTAACCGTTTACCCCGCTTCTCGCCCAACTCGTCAAGCATC 5980 | |||||| |||| | | ||||| || || | |||| | ||| Sbjct 960903 CTGATAGCGGAGGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATT 960962 Query 5981 ACGCGAAGTTCCCGCAACAAAAGAGTGTACGTATTGCGGTCCACCTCGGCATTACCCAAC 6040 | || | |||| || || | ||| || | ||| | ||| |||| | Sbjct 960963 TCACGCAATTCCTTCATTAATTCAACGTAAACATCTCCGTCTTTCG-GGC--TACCGAGG 961019 Query 6041 ACAGGATTAGCACCCTTTCCACCCGGAAACTCCCAGTCAATGTCCACTCCGTCAAAGAAC 6100 | || ||||| ||||| || || || || ||||| || ||||| || || || |||||| Sbjct 961020 TCGGGGTTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAAC 961079 Query 6101 TTCCATGTCTCCAGAAACTCGCGGACACTTGTGACGAACACCTTACGTTTGGAGTCATCG 6160 ||||| ||| || || || ||| ||||| | | || | ||| Sbjct 961080 TTCCAGGTCAAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTGTCG 961139 Query 6161 TTCATAAAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACTGTCAAC 6220 | | || | || |||||| | ||||| || || ||||| ||||||| | | Sbjct 961140 GTGAAGAAGAAGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGT 961199 Query 6221 GAAGGGTTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTACGCTTCGTTG 6280 ||| || |||||| | |||||||||||||||||| || ||||| | |||||| Sbjct 961200 TCAGGCCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTC 961259 Query 6281 TACGCCTCAACGCCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTCACC 6340 | | | || ||||||||||| || | |||||||| ||||||||| || Sbjct 961260 CAGGAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACT 961319 Query 6341 TTGAAGTCATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAAG--GAATTGGGAATCT 6398 ||||| || || || || ||| ||| |||| || || | || | || | |||| Sbjct 961320 TTGAAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCG--ATCT 961377 Query 6399 GCTTGAGGGCGTCGTTTATGCCGTTACCACCACAAATTGGAATGAACCCGTACAGCAGGT 6458 || | | |||||| ||||| | ||||| |||||||||||||| ||||| || | | Sbjct 961378 CTTTTAAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAAT 961437 Query 6459 GCGTCAGATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACT 6518 | ||||| ||||| ||||| || || | || || | ||| ||||| ||||| | Sbjct 961438 GAGTCAGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATT 961497 Query 6519 CCACGAAATACGCACCGACGAC 6540 | ||||| || || || || || Sbjct 961498 CTACGAAGTATGCTCCAACAAC 961519 >seq2316 Length=6356476 Score = 138 bits (152), Expect = 7e-28 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 34748 ATCATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATA 34807 |||||| ||||| | || |||||| |||||||||| ||| ||| ||||| ||||| || Sbjct 2659578 ATCATTACCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTA 2659519 Query 34808 GTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTC 34867 ||| || | | ||| |||| || | |||||| ||||| || || | | |||||| || Sbjct 2659518 GTCGGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATC 2659459 Query 34868 TTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGC 34927 | | || | ||||| ||||| ||| ||| ||| || | | || | ||| ||| Sbjct 2659458 TGGGGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGC 2659399 Query 34928 CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || | ||||||||||| |||||||| || || || ||||||||||| Sbjct 2659398 TTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq1964 Length=1360 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| || || ||||| ||||| ||||| || || | || |||| ||| Sbjct 256 ACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACCATCCTCC 197 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || |||||||| || || |||||||||||| | || | || |||||||| Sbjct 196 AACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGG 137 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || || ||||| || | ||| || |||| Sbjct 136 ATCTTGGCCTTAAC--ATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTGTTT 79 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || |||||||| || |||||||||||| Sbjct 78 TGCCAGTCAGAGTCTTGACGAAGATCTGCATA 47 >seq593 Length=2014934 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || || | | ||||||||||| || ||| || ||||| || ||||| ||| Sbjct 755145 CCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAA 755204 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || ||||| || || |||||||| ||| | || Sbjct 755205 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 755264 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| ||| ||| ||| || || || || | || | ||| | Sbjct 755265 ATGCCCTCCTTGTCTTGAATTTTCGCTTTTAC--ATTCTCAATTGTGTCTGATGGCTCCA 755322 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || || ||||| || || || || ||||| |||||||| Sbjct 755323 CCTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324618272627472