Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2316 482 3e-131 seq2205 114 1e-20 seq348 113 5e-20 >seq2316 Length=6356476 Score = 482 bits (534), Expect = 3e-131 Identities = 1186/1792 (66%), Gaps = 38/1792 (2%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || || || |||| ||| | |||| || | ||| | |||||||||||||| || Sbjct 2965196 TTTGTCAACCGTGAACTGAATAGCATTAGCAGCAGGCTTTATACGTAAATAATACATTCC 2965255 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || || ||||| | ||||| | || || || || || ||||| |||| | || Sbjct 2965256 TGTTTTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTTTCCATAATTCGG 2965315 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | | |||||| |||| ||||||||| || || ||||||||||||| |||||| || Sbjct 2965316 TTCAGCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGC 2965375 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| | | || | | |||||||| ||||||||||| | || | ||||||| Sbjct 2965376 CATTTTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCTAATGTC 2965435 Query 47213 TTCTGGGAGAT--TAG-TATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269 | ||| | | | | |||||||||| || || ||| | || || ||||| | Sbjct 2965436 CTTTGGTATACGCTCGATATTTTGAATGGAACCATTGTTGTGAATTATCAGATTTTTCAT 2965495 Query 47270 ttcatttgacca-aagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 || | ||| || | | | | | || || | || | |||| | ||||||| | Sbjct 2965496 GTCGTCGTCCCATAAATCTGCCTGC-GTCAAGTCTCGCAACAAATGATGGTTAACAACCT 2965554 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTAT---ATATATTACTTGTATATGGTTCTATAG 47385 | ||||| ||||| | || ||| || | | || || |||| ||||||| | | Sbjct 2965555 GGAATTCCCCAGACAAAAC---ACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAGG 2965611 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 ||||||| ||||| || ||||| || || || ||||||||||| | || | ||| |||| Sbjct 2965612 ATTCATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAA-AAGC 2965670 Query 47446 TATTT-CTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCT 47504 | || | | |||| ||| || | ||| ||||| ||||| Sbjct 2965671 GAATTGCGCAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCA 2965730 Query 47505 GATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTA 47564 |||||| || ||| | |||||||| | ||| |||| ||| ||| || | | Sbjct 2965731 GATGGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACTTCCTTCA 2965790 Query 47565 TATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAA 47624 ||||| ||||| || | | || || ||||| ||||| ||||| ||||| | ||| Sbjct 2965791 TATGTACTATAAACTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAA 2965850 Query 47625 TATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGC-TTCTGATGATTCAAAAGGATA 47683 ||||| ||||| || |||| | ||| || || |||| || | | |||| ||||| Sbjct 2965851 TATATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACT-TTCATAAGGAAT 2965909 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 |||||||| || || ||||| || ||||| ||||||||||| || Sbjct 2965910 GCGCATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCG 2965969 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 | || ||| || |||||||| | ||| || || | ||| ||||||||||| || Sbjct 2965970 CATGTTGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAG 2966029 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTA- 47862 | |||||| || || |||| | | | |||| | Sbjct 2966030 GTTTTGTGTGATTATCTTTGTGACTTCTCTCAACTTTGTAAAGTTGTATGTTTTATCTTC 2966089 Query 47863 --TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATT 47920 |||||||||| || | || ||||| |||| |||||| ||||| || |||| || Sbjct 2966090 ATTAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGA 2966149 Query 47921 AGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980 ||| |||| | ||||| | || | ||||| ||||| || || || | ||||| || Sbjct 2966150 AGTGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTG 2966209 Query 47981 ATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040 ||| | ||||||| | || || || | |||| | ||||| || ||||| | || Sbjct 2966210 ATTGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTG 2966269 Query 48041 AGATTCAATGATAGATTTCCAAACAGTCCT--AGC-----CTTTAT-AACAGCTCTAGCT 48092 | ||| ||||| | |||||| |||| || ||| ||| | |||| ||| || Sbjct 2966270 TGCTTCTATGATTGCTTTCCA--CAGTTCTTGAGCTCGGACTTGCTTAACAAATCT--CT 2966325 Query 48093 TTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCT 48152 || || | ||| |||| |||||| |||||||| || || | ||| | Sbjct 2966326 TT----TCCTCTTCATATTGCCCATATAATGCTTCAAATTCTTCTCCCCA-ACAGTCGGC 2966380 Query 48153 AAC-CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGT 48211 || || || || |||| ||| ||||| || ||| ||||| |||| || | | Sbjct 2966381 AAGACCGGGGCAATCATGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGCTT 2966440 Query 48212 CATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATT 48271 |||||| | |||||| ||||| | || ||||| || || | ||| | |||||| || Sbjct 2966441 CATAAACAAATCTGGGATCCATAATGCATAAAATAGTTCTCTGGCTCTGACTTCTTCTTT 2966500 Query 48272 GCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 |||| ||||| |||| || || | ||| || | | ||||| ||||| |||||||| || Sbjct 2966501 GCCAGTATTCTTTTTCAGATCTAAAAACTCAAACACATCAGAGTGCCAGGGTTCTAAGTA 2966560 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 || || | | ||||||||||||| || |||||||| || | ||| || || ||||| || Sbjct 2966561 AATAGCAAATGCACCTGGTCGTTTGTTGCCTCCTTGGTCAACATACCTTGCTGTATTATT 2966620 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 || |||| |||||||| |||| |||||| |||| ||| || || || | |||||| | Sbjct 2966621 GTACACTCGCAACATTGGTACAAGACCATTGGATACACCGTTAGTACCTGCTATATAAGT 2966680 Query 48452 TCCACTAGCTCTTATATTACTAA-TTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 || | ||||| ||| | || || | | || || ||||| || ||| || |||| Sbjct 2966681 ACCTTTTGCTCTAATACAATGAACATGTAGT-CCAATGCCACCAGCTGATTTTGAGATTA 2966739 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| |||| || || ||||| || ||||| || || |||||| ||||| || | Sbjct 2966740 ATGCACATTGTTTTAGTGTGTCATATATACCTTCAATGCTGTCATCTTTCATAGCTATGA 2966799 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 | || ||| ||||| ||| || |||| ||| | |||||||| ||| |||| Sbjct 2966800 GGAAGCAAGAAGACAATTGTGGTCTCGGAGTTGCTGCAGAGAATAATGTGGGACTGGCAT 2966859 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | |||| |||| || || || || || || |||||||| | ||||| || || Sbjct 2966860 GTGTAAAGTATTTTTCAGACAATAAGTTGTAGGTTTCAATGGCTGAATCAATGTCTTCAC 2966919 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 ||| || || || || || ||||| | ||||| || ||||||||| |||| Sbjct 2966920 CATGGATTCCAATTGAGACCCGCATCAGCATATGCTGGGGTCTTTCAGCAAT 2966971 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 48926 tttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATC 48985 ||| || |||||||| || | ||||||||||| || ||||||||||| || ||| ||||| Sbjct 2967860 TTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTAGCAGCTAGTACAGCGTAATC 2967919 Query 48986 TGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAG 49044 ||||||| |||||| ||| || || ||||||| ||||| | || ||||| || Sbjct 2967920 TGGATGATCTGTTGT-CATAGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTCCACAG 2967978 Query 49045 TAGTTACACCTGTATATATTCCTTGAATAACTTTCA 49080 | ||||| || | || || || || ||||||| Sbjct 2967979 TTGTTACTCCCGAGTAAATGCCACTGATGACTTTCA 2968014 >seq2205 Length=3731788 Score = 114 bits (126), Expect = 1e-20 Identities = 245/362 (68%), Gaps = 7/362 (2%) Strand=Plus/Minus Query 136634 ATGACTCCTATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAA 136693 ||||| ||| || || ||||| || ||| ||||| ||||| |||| | || | || Sbjct 1151102 ATGACACCTGTTTTGCCTATGTTAGCTGAAGCATGTAAATCTATAGAAATGGCTATGAAG 1151043 Query 136694 AAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCAC 136753 || | |||||| ||||| || | |||||||||||||| || ||| | || || ||||| Sbjct 1151042 AAATGTCCAAACGGAATGTTCTCGGAAATAAAATATGATGGTGAAAGAGTTCAAGTTCAT 1150983 Query 136754 AAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATAAA 136813 || || || | ||| || |||| | || | || | |||| ||||||| Sbjct 1150982 AAAAAAGGTTCTGAATTTAAATATTTTTCTCGAGCTCTTAAGGCTGTAATGGCACATAAA 1150923 Query 136814 GTTGATTATCTTAATGAGTATATACCTAAAGCCTTT-AAAAATGTATC-ATCTCTTATTT 136871 || || || | || || ||| | || || || ||| ||| ||| | || | || Sbjct 1150922 GTAAATCATTTAAAAGAATATTTGCCGAAGGCATTTCCTAAAGGTACCGATTTGGTA--C 1150865 Query 136872 TAGATTCAGAAATAGTACTAGTAGAT---AAAAATAATAAACCATTACCATTTGGCAGTT 136928 ||||| ||||||| |||| || ||| |||| | ||||| ||||||||||| | | Sbjct 1150864 TAGATGCAGAAATTTTACTGGTTGATGTGAAAACTGGGAAACCTTTACCATTTGGTACAT 1150805 Query 136929 TGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATT 136988 | |||||||| ||| || | || || ||| | | ||||| ||| || ||||||| Sbjct 1150804 TAGGTATACACAAACAGTCTGCATTCAAAGATGCTGAAGTATGTCTATACGTTTTTGATT 1150745 Query 136989 GT 136990 || Sbjct 1150744 GT 1150743 >seq348 Length=4065129 Score = 113 bits (124), Expect = 5e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || ||| |||| |||||| || || ||||| ||||||| || | || | Sbjct 3297633 CCTCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCT 3297574 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||||||||| || ||||| ||| |||||||| || |||||||| || ||||| | Sbjct 3297573 TCAACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATG 3297514 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||||| || |||||| | | || || | ||||||| | |||||| || | Sbjct 3297513 CAACTATCCTCTCTCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTCTG 3297454 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||| ||||| ||||| || | ||||| || | ||| || Sbjct 3297453 CCTTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAA 3297414 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||| | | ||| | |||||||| || ||||| || || || | ||| || ||||| Sbjct 3297244 TCTCTGATATAAGTATCTATCAGCAATGAATACATCTCAGAGTGTACATTCTCCATAGCA 3297185 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || || ||||||||||| | |||||||| || || ||||| |||||| || Sbjct 3297184 ATTTGGAATCCGTAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGCTCT 3297125 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||| |||||||||||| || ||||| || |||||||| || || |||||||| ||| Sbjct 3297124 ACCAGATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAAGACATGTTTTATA 3297065 Query 19405 AAATG 19409 ||||| Sbjct 3297064 AAATG 3297060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562081579881360