Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq336 253 2e-61 seq2205 178 1e-38 seq763 116 3e-20 seq593 100 2e-15 seq3427 95.1 1e-13 seq447 91.5 1e-12 seq325 89.7 4e-12 >seq336 Length=3672263 Score = 253 bits (280), Expect = 2e-61 Identities = 416/594 (70%), Gaps = 8/594 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | ||||| ||||| ||||| |||||| ||||| || | |||||| ||||||| Sbjct 248797 GCTGTGGGTATTGATTTGGGAACAACATATTCCTGTGTGGGCGCGTGGCAACATGGTAAC 248738 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || ||||| || |||||||| ||| | || ||||| ||||||||| | ||||| Sbjct 248737 GTAGACATAATTGCAAACGATCAAGGAAACCGCACAACTCCGTCTTATGTTGCGTTCACT 248678 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACC 550168 || || |||| | | || |||||||| ||| |||| ||||| || || ||| Sbjct 248677 GACACCGAACGGCTCATAGGAGATGCAGCCAAAAATCAGGTAGCCA-TG--AACCCTGAT 248621 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 ||||||||||| ||||| || ||||| |||||| | | | | ||||| | ||||| ||| Sbjct 248620 AATACTATTTTCGATGCCAAGCGTTTGATTGGACGTAAGTATGATGATCCTACTGTACAG 248561 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 ||| || ||||||||||| || || |||| || | | || |||||| | ||| || Sbjct 248560 CAAGACATAAAGCATTGGCCCTTTAAAGTTGTCAACGATAACGGGAAACCTAAAATTCAA 248501 Query 550289 GCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAAT-TTCATCTATGGTTTT 550347 | | | ||||| | ||| || | ||||| || | || | ||||| || Sbjct 248500 GTATCGTTTAAAGGAAAAGCAAAAGTGTTCACTCCAGAGGAAGTAAGCAGC-ATGGTGTT 248442 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | | ||||||||| | ||||| | | | | || | |||| || | ||||| || Sbjct 248441 ACTAAAAATGAAAGAGACAGCTGAATCATATCTAGGCAACAAAGTAACTAAAGCAGTTAT 248382 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || ||||| || || || |||||||| || | ||||||||||||||||| || ||| Sbjct 248381 TACAGTACCTGCTTACTTCAATGACTCTCAGAGACAAGCTACTAAAGATGCGGGTGCTAT 248322 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||| ||| | || ||||| | || || ||||| || || ||||| || | || || || Sbjct 248321 TGCCGGATTAAACGTTCTCAGAATAATTAATGAGCCAACGGCTGCAGCTTTGGCTTACGG 248262 Query 550528 ACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 |||||||| || | ||||| || || | |||||||||| ||||| Sbjct 248261 CCTTGATAAGAATTTAAAAGGAGAACGCAAAGTCTTAATCTTTGATTTAGGAGG 248208 Score = 239 bits (264), Expect = 4e-57 Identities = 579/867 (67%), Gaps = 16/867 (2%) Strand=Plus/Minus Query 551765 TCTCTTTTCT--GTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGAT 551822 |||||||| ||| |||||| ||||| ||||||||||||| ||||||||||| Sbjct 248167 TCTCTTTTTGAAGTAAAAGCTACAGCCGGAGACACTCATCTTGGTGGTGAAGATTTTGAC 248108 Query 551823 AATAGACTGGT-ATCATGGTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATC 551881 |||||| | || | | | | || ||| || |||||| |||| | ||| ||| ||| Sbjct 248107 AATAGATTAGTTAACTTTCT-TGCTGACGAGTTTAAAAGAAAGTATAAAAAAGAT--ATC 248051 Query 551882 TACATCTG--CCAA-AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGC 551938 | ||| |||| ||| |||||||| | | |||||| |||| |||| |||||| | Sbjct 248050 AA-ATCGAACCCAAGAGCACTTCGTCGCTTGCGCACTGCTGCCGAACGAGCTAAACGAAC 247992 Query 551939 TCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTA 551998 ||||| || ||||| || | | ||| ||| | ||| | | | ||||| || || | Sbjct 247991 ACTTTCTTCCAGTACTGAAGCAAATATAGAAATCGATGCTCTTTACGAGGGTATAGACTT 247932 Query 551999 TAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAAC 552058 | | | ||||| || || ||| || || | | ||| | ||| | | || Sbjct 247931 CTTTTCACGAATTTCAAGAGCACGATTCGAGGAACTAAACGCAGATTTATTTCGTATCAC 247872 Query 552059 AATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGA 552118 | || |||||||| ||| ||||| ||| | || || || ||| | | |||| Sbjct 247871 TCTAGAGCCAGTAGAGAAAGCTTTAAATGATGCCAAAATGGACAAAAGCTCTATCAATGA 247812 Query 552119 AATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTA 552178 ||||| || ||||| || || || | || ||||| |||| | | ||| || Sbjct 247811 TATTGTTCTGGTTGGGGGCTCAACTCGTATACCTAAGATTCAGAATTTATTACAAAATTT 247752 Query 552179 TTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 || |||||||||||| | ||| | | ||||||| ||||||||||| || |||||||| Sbjct 247751 CTTTAATGGTAAAAAACTCAATTTATCTATTAATCCTGATGAGGCTGTGGCTTATGGTGC 247692 Query 552239 CGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACT 552298 ||| |||| || || || | || | | || || | || || | | | Sbjct 247691 TGCAGTTCAGGCTGCAATATTAAGCGGGGAGCGTCATTCCAAGATTCAGGATGTGCTTTT 247632 Query 552299 TGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCT 552358 || ||||| || || ||||||| ||| | ||||||| ||| ||| ||||||| || | Sbjct 247631 AGTCGATGTCACCCCCTTATCTCTAGGTATTGAAACAGCTGGTGGTGTTATGACGAAGAT 247572 Query 552359 TATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGA 552418 |||| | || ||| || ||||| | | | || | ||| | || ||||| || Sbjct 247571 AGTCGAACGCAACGCTAAAATCCCTTGCACACACTCCCAGACTTTTACCACCTATTCGGA 247512 Query 552419 TAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAA 552478 ||||||| | ||||| | |||||| | | |||||| ||||| | | || || |||| Sbjct 247511 TAATCAACCAGCTGTCAACATTCAAGTGTATGAAGGTGAAAGGGCAATGACCAAGAATAA 247452 Query 552479 TAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCA 552538 ||||| | || |||||| || || ||||| || ||||| ||||| || ||||| || Sbjct 247451 TAATCTGTTAGGAACTTTTGATCTAACTGGTATACCACCTGCACCTCGCGGTGTACCTCA 247392 Query 552539 AATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||| || || || || || ||||| || ||||| || | || || | ||| || || Sbjct 247391 AATAGATGTAACATTTGACATCGACGCTAATGGTATCCTCAACGTTTCCGCTAAAGAGAA 247332 Query 552599 ATCTAGCA---ACAAGAGTAAAAATAT 552622 |||| ||||||||||||||| Sbjct 247331 ---CAGCACTGGCAAGAGTAAAAATAT 247308 >seq2205 Length=3731788 Score = 178 bits (196), Expect = 1e-38 Identities = 298/422 (71%), Gaps = 18/422 (4%) Strand=Plus/Plus Query 550160 AATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCG 550219 ||||| | |||||||| |||||||| ||||| | || ||||||| ||||||||| | Sbjct 2069585 AATCCGAAAAATACTATCTTTGATGCGAAACGAATGATCGGAAGAAAGTTTAATGATCCT 2069644 Query 550220 ACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCT 550279 | |||| ||| || || |||||||| ||| || |||| | | ||| || || Sbjct 2069645 AAACTTCAACAAGACATTAAACATTGGCCATTCGAAGTTGTATCGGATAATGGGAAGCCG 2069704 Query 550280 TATATTGAAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCAT 550337 |||| | | | || ||| || | |||| | ||| | || ||| ||||||| | Sbjct 2069705 GGAATTGTGGTCCAATACAAGAAAGAACG--TAAAAAGTTTACGCCTGAAGAAATTTCCT 2069762 Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGCC--AGTGCTTTTGTTGGTCAAGAA--GTT 550393 | ||| || ||| ||||||||||||||||| | || | | | || | | | || Sbjct 2069763 CCATGATTCTAAGCAAAATGAAACAAACAGCTGAAATG--TATCTCGG--AGGTACTGTC 2069818 Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 || ||||| || || |||||||| ||||||||||| ||||| ||||| ||||| |||||| Sbjct 2069819 ACTGATGCGGTTATTACTGTACCGGCATATTTTAACGACTCTCAACGACAAGCGACTAAA 2069878 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 || || ||| ||| ||||| | ||||||||| | ||||| || ||||| || || || Sbjct 2069879 GACGCAGGAGCGATTACTGGATTGAATGTTCTTAGAATTATTAACGAACCAACAGCCGCC 2069938 Query 550514 GCACTTGCATATGGACTTGATAAACAT---AATGATCAAGAACTTAATGTACTCATCTTT 550570 || || || ||||| | || ||| || || | | |||| |||||||| || ||| Sbjct 2069939 GCTCTCGCTTATGGCTTAGACAAAGATTTAAAAGGT-GAGAA--GAATGTACTAATATTT 2069995 Query 550571 GA 550572 || Sbjct 2069996 GA 2069997 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 |||||||| | | || ||||||||||||||||| ||| ||| |||||| | ||| | Sbjct 2069952 CCATAAGCGAGAGCGGCGGCTGTTGGTTCGTTAATAATTCTAAGAACATTCAATCCAGTA 2069893 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 || | ||| ||| ||| ||||| ||||| | || ||||||||||| || |||||| Sbjct 2069892 ATCGCTCCTGCGTCTTTAGTCGCTTGTCGTTGAGAGTCGTTAAAATATGCCGGTACAGTA 2069833 Query 361826 ATCACTGC 361833 || || || Sbjct 2069832 ATAACCGC 2069825 >seq763 Length=6614576 Score = 116 bits (128), Expect = 3e-20 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 550337 TCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACG 550396 || ||||| | | ||| ||||| |||||||| || | | ||| || || | Sbjct 6225193 TCAATGGTGCTTACGAAGATGAAGGAAACAGCCGAGGCCTACCTCGGTAAAACGGTGCAG 6225134 Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 |||||||||| || || ||||| || || || ||||||||| | || || ||||||||| Sbjct 6225133 AATGCAGTAATCACGGTTCCAGCGTACTTCAACGACTCACAAAGACAGGCCACTAAAGAT 6225074 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 || || || |||| || |||||||| || || ||||| || || ||||||||||| Sbjct 6225073 GCGGGTACCATCTCTGGCCTCAATGTTCTCCGGATCATCAACGAGCCGACTGCTGCTGCG 6225014 Query 550517 CTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 |||| || || ||||| || | | | ||||| ||||||||| || || ||| Sbjct 6225013 ATTGCGTACGGTCTTGACAAGAAGGGAGGTGGAGAACGTAATGTACTTATTTTCGAT 6224957 >seq593 Length=2014934 Score = 100 bits (110), Expect = 2e-15 Identities = 141/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 563282 TTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAA 563341 || |||| | ||||||||| || | || || | |||||| || || || || |||| Sbjct 755180 TTCCTTTTG-AATATTGTAGTCTGAAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAA 755238 Query 563342 AAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTG 563401 | ||||| | ||||||||| || ||||| || || || ||||||||||| |||||| Sbjct 755239 AGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGAATTTTCGCTTTTACAT 755298 Query 563402 CCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTA 563460 ||||||||| || | || | || || || || | ||| || || || || |||||| Sbjct 755299 TCTCAATTGTGTCTG-ATGGCTCCACCTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTA 755357 Query 563461 ACGAAAATTTGCAT 563474 || ||||| ||||| Sbjct 755358 ACAAAAATCTGCAT 755371 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||||||||| | ||||| || ||| ||||| || ||||| |||| || || | Sbjct 754926 AGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGG--ATGTTGTAGTCAGAAAGGGTAC 754983 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| || || ||||| || ||||| || | ||| ||||| || || || || |||| Sbjct 754984 GGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTT 755043 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 ||||||| || || || ||| || |||||| ||||||| | | || | | Sbjct 755044 CTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACCTCCAAGG 755103 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || || || | ||| || |||||||||||||| Sbjct 755104 TGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCAT 755143 >seq3427 Length=3459338 Score = 95.1 bits (104), Expect = 1e-13 Identities = 211/314 (67%), Gaps = 11/314 (4%) Strand=Plus/Minus Query 429105 GATGTATTAAATTCATAATCAATCCTTTAATATGATAACCGTCCACGTCTTGGTCAGCTA 429164 |||| || || || || |||| ||||| ||||| ||||||| || || ||||| | Sbjct 207943 GATGAATGAAGTTGATGATCAGACCTTTGATATGCGAACCGTCTTGATCCTGATCAGCCA 207884 Query 429165 ATATCATAATACTACCATACCTAAGTTCTTTTAGATCATTA-------TATACTTTCCCT 429217 |||||| | ||||||| || | | ||||| ||||| | |||| || | Sbjct 207883 TTATCATCACTTTACCATATCTTAATGTTTTTAAATCATCAAGTGAGTTATATTTCTTTT 207824 Query 429218 TGTTCAAGA--CCAATGAtttttttGATAGCAGTTATTTCTTCATTTTCTGCTATTT-TC 429274 | | | | || | ||||||| | | | | ||||| |||||||| | || | Sbjct 207823 TATACTGTAATCCGAGGATTTTTATAAGGTTATTAATTTCAACATTTTCTAAAACTTGTT 207764 Query 429275 AACGGACTTTTTGTACGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAA 429334 | | | | | ||||| ||||| ||||| ||||| | ||| || ||||| |||| | Sbjct 207763 TATGTGATGCATCT-CGTACGTTCAAAGGTTTACCCTTTAATGGGAAAACGCCGTAATGA 207705 Query 429335 TCTCGACCAATAACATTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTC 429394 |||| || | |||| | |||||||||| || || ||||||||||| ||||| || || Sbjct 207704 TCTCTGCCTACAACACTAAGTCCAGACACAGCTAATGTTTTAGCTGAGTCTCCCTCAGTG 207645 Query 429395 AAAATAAGTGTACA 429408 | ||| | ||||| Sbjct 207644 AGAATTAAGGTACA 207631 >seq447 Length=7652121 Score = 91.5 bits (100), Expect = 1e-12 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 394021 AAATGTTAAATTCATTGCAATAATTTGTGGTAGTCCCACTTCATTAAGAGCAATATTTGG 394080 |||||||||||| |||||| ||||| ||| |||| | || | | |||||| Sbjct 2011650 AAATGTTAAATTTTGTGCAATTGACCTTGGTACTCCTACTTGGTCAATACGTAAATTTGG 2011591 Query 394081 ATCCGAGGTAATAACTGTACGACCTGACATATCCACACGTTTTCCCATAAGATTTCCACG 394140 ||| | ||||| || |||||| | || | || ||||||||||||||||| ||||| | Sbjct 2011590 ATCGGGTGTAATTACAGTACGAGCGGAGAAGTCTACACGTTTTCCCATAAGGTTTCCTCT 2011531 Query 394141 AATTCTACCTTCTTTACC 394158 |||||| |||||||| || Sbjct 2011530 AATTCTCCCTTCTTTTCC 2011513 >seq325 Length=5610163 Score = 89.7 bits (98), Expect = 4e-12 Identities = 198/297 (67%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || |||||| | ||||| || ||| ||||| || || ||||| |||| || Sbjct 5127800 AGCAATTGGAATAGATCTGGGAACGACGTATTCATGTGTGGGAGTGTGGCAGCATGGCAA 5127741 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || || ||||| || ||||||||||| || || ||||| || || | ||||| Sbjct 5127740 TGTGGAGATCATCGCCAACGACCAAGGTAACAGGACCACACCATCGTACGTAGCATTCAC 5127681 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || || | | | || |||||||| || | || | | || || | ||| Sbjct 5127680 CGACACAGAGCGGCTGATCGGCGATGCAGCGAAGAACCAGGTGGCCCTCAACCCCAACAA 5127621 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || | || || || || || | || ||| | | || | ||| | | | ||| Sbjct 5127620 CACAGTGTTCGACGCCAAGCGGCTGATAGGACGCAAGTTCGACGATCCCAAGATCCAGCA 5127561 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 ||| |||||||||||||| ||| || | | | || | |||||||| | ||||| Sbjct 5127560 AGACATGAAGCATTGGCCGTTCAAAGTGATCAGTGATGGCGGAAAACCCAAAATTGA 5127504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029091125408260