Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3650 318 5e-82 seq593 152 4e-32 seq2316 132 4e-26 seq224 82.4 6e-11 >seq3650 Length=1334389 Score = 318 bits (352), Expect = 5e-82 Identities = 719/1064 (68%), Gaps = 25/1064 (2%) Strand=Plus/Plus Query 42470 TCTATAGTCTACGACGCCATCTTCCCAAGTACCCGAAACTGGACCTGTCGCAATACCCGT 42529 ||||||||| || || || |||| ||||||||| ||||| || ||||| | || || Sbjct 960554 TCTATAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGT 960613 Query 42530 GAAGGGATTATTGTTTTGGTAATTGCTTACTCCGGTCCAACCTCGTCCGTACATGGCCAC 42589 ||| ||||| |||| || |||||| || || ||||| || ||||||||||| || || Sbjct 960614 GAATGGATTGTTGTCTTCGTAATTATGAACACCAGTCCAGCCGCGTCCGTACATAGCTAC 960673 Query 42590 GCCTAAAATTATTTTTTGAGGTTTCACTTTTTGTTTCAA--AAGCGTTTGAACGGCATAA 42647 ||| | | || || | ||| ||||| ||| ||| || ||| | | || | Sbjct 960674 GCCCACCACAATCTTCTTAGGGTTCACGCCTTGAG-CAAGCAAATATTTCA-CACCAAAG 960731 Query 42648 TCTGCCGTGTAATGTTCGTTTTCGTTCCATTCGGGAGCATACAGATTTGTTTGATGGCCC 42707 || | || ||| ||| || |||||| |||| || || || || ||||| || Sbjct 960732 TCAGTGGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGATGACCG 960791 Query 42708 AAATCTGAATTTGACCAAGCACCTTTAAAGTCATAGCTCATTAAAAATATTTTATCCAAA 42767 | || ||||| || |||||||| ||||| ||||| | || || | |||| | Sbjct 960792 AGGGTGTCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCATA 960851 Query 42768 TAGTTTTGAGCATCGTTGTAATCGACAATAGCGATTTTGTCGTCTCCCGCACTAATTGCG 42827 || |||||||| || |||||||||||| ||| || || ||| ||||| || ||| Sbjct 960852 TACTTTTGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCG 960911 Query 42828 CTAGTCAATTCGTATTTGCGATTAGTTTCGTTTTCTAGTTCGTCCAGCATGTCGCGCAAT 42887 |||| |||||||| | || || | || |||| || ||| || |||||| Sbjct 960912 GAGGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCACGCAAT 960971 Query 42888 TCTCGTAACAAAACTACATACGTAAGA----CCGTCATTTTGAGGATCTCCAATTGTCGG 42943 || | | | || | || |||||| ||||| ||| || | | | ||||| Sbjct 960972 TC-CTTCATTAA--TTCA-ACGTAAACATCTCCGTC--TTTCGGGCTACCGAG--GTCGG 961023 Query 42944 A-TTAGCTCCTTTACCACCGGGAAATTCCCAATCAATATCGACGCCGTCAAAAAATTTCC 43002 |||||||| ||||| || || ||||||||||| || || || || || || || |||| Sbjct 961024 GGTTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCC 961083 Query 43003 AAGTGAGCAAAAACTCACGTACTGAATCCACAAATATTTTACGCTTGT--TTGCATCGCT 43060 | || | | || || ||| ||||| || || | | ||| | ||| ||| | Sbjct 961084 AGGTCAAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTG--TCGGT 961141 Query 43061 GAAAAAATAAAACGGGTCGGACAATGTCCATCCACCTATCGAAGGTAACACTTTAAGATG 43120 ||| || | || || |||| | |||||| ||||| || ||||||| | ||||| | Sbjct 961142 GAAGAAGAAGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTTC 961201 Query 43121 AGGGTTAGCTTTTTTGGCTGCCATTAATTGACCAAAGTTGCCTTTGTACGGTTCATTCCA 43180 ||| | |||| |||| | ||| | || ||||||||||||||||| ||||| ||||| Sbjct 961202 AGGCCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCA 961261 Query 43181 CGAGGAAACACCTTTTTGTGGTTTCTGTATAGCCGCCCACGGATCGTGTATGGAAACTTT 43240 || || | || || ||||||||||| | ||| ||||| |||||||| || || ||||| Sbjct 961262 GGAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTT 961321 Query 43241 GAAGTCGCTTCGACCCGCACAAGATTTTTGAAGAGCTTCAAAACTGCCAGGAATAGATTT 43300 ||| || ||| || || ||| | |||||||||| |||||||| || ||| Sbjct 961322 GAAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCTTT 961381 Query 43301 TAAACTGTCATTAATGCCGTCACCGCCGCATATCGGAATAAATCCGTACAACAAATGAGA 43360 ||| ||||| || ||||| || || ||||| || ||||| || ||||| | ||||||| Sbjct 961382 TAAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGT 961441 Query 43361 CAAATTGGGTAAAGGCACTTTGTTGACAGGAAATGAACGACCGTATACGCCCCATTCTAC 43420 || || || | || || | ||| || ||| | ||| || ||||||||||| Sbjct 961442 CAGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTAC 961501 Query 43421 AAAATAAGCGGCCACGGCTTTATCGGTGCCCAATTCGAAAGGTTTATTGTTTTCT-TGCC 43479 || || || | || |||| | | | || ||| |||| || |||||| | Sbjct 961502 GAAGTATGCTCCAACAACTTTTCCAGAAGTCTGTTTGAATAGTTTGTTCTTTTCTCCGAG 961561 Query 43480 A-TGTATATGGCAAAGGATCTAAATGCGAACCGTCCGTATCAGC 43522 | |||| || ||| ||| |||||| ||||| |||||||| Sbjct 961562 AGTGTACAT--CAAGGGAGGTAAATGACTGCCGTCAGTATCAGC 961603 >seq593 Length=2014934 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||||||||| | ||| || ||||| || ||||| ||||| |||||||| || | Sbjct 755145 CCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAA 755204 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||||| ||||| || | ||| || ||||| || ||| Sbjct 755205 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 755264 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || ||||||||||| ||||||| | || | ||||| || | ||||| Sbjct 755265 ATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACC 755324 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || || |||| ||||| ||||| |||||||| Sbjct 755325 TCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | ||| | ||||| ||||| ||||||||||| || || |||||||| | Sbjct 755371 TTCCTCCTCTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCTG 755430 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| || | || || || ||||| ||||| | ||| || || || | Sbjct 755431 ACAATGTGCGTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGG 755490 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 ||||||||||||| ||||| ||||| || ||| |||| | |||||||| | || | Sbjct 755491 GAATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCAA 755550 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | |||| || ||||| || || || || || || |||||||| Sbjct 755551 CCTCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | || || ||||| || ||||| ||||| || ||||| || | Sbjct 754917 CCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAA 754976 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | || || || ||||| ||||| | ||| || || || || Sbjct 754977 AGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 755036 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||| || || || ||| ||| | || | || ||||| | ||| || Sbjct 755037 ATACCTTCTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACC 755096 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | |||| || ||||| || ||||| || || || || |||||| Sbjct 755097 TCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCATG 755144 >seq2316 Length=6356476 Score = 132 bits (146), Expect = 4e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 101238 CATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAAT 101297 |||| ||||||| | | || || || ||||| || ||||| || || || ||||| | Sbjct 2659576 CATTACCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGT 2659517 Query 101298 CGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGG 101357 ||| | || | |||| || || || || || || || ||||| | || ||||| | Sbjct 2659516 CGGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTG 2659457 Query 101358 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTT 101417 | |||||||| ||||| ||||||||||| ||||||| |||| | ||||||||| | || Sbjct 2659456 GGGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTT 2659397 Query 101418 CCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 | || || | || | ||||| || || | |||||||| || |||||||| ||| Sbjct 2659396 CAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTT 2659341 >seq224 Length=2929446 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 3906 AATAAAATGCTTAAACAACAATTTGGAATAAACACACCGACTATATCTAATTTGAAGCAA 3965 ||| || || | || |||| |||||| | | ||||| || || | | ||| | | | Sbjct 2569438 AATGAAGTGATGAAGCAACTTTTTGGAGCAGATACACCAACACTACATGAATTGTATCCA 2569497 Query 3966 AACGTTAAGCTGTTACTAATAAATGTACATTCGATTTTTGACAACAATCGACCTGTACCA 4025 || ||| | |||||||| ||||||| || |||||| || |||||||| ||||||||| Sbjct 2569498 AAAGTTGAATTGTTACTATTAAATGTGCACGCGATTTGGGAAAACAATCGTCCTGTACCA 2569557 Query 4026 CCCAGCGTCCAATATTTAGGTGGACTTCAT 4055 || | ||| || ||| |||||| | ||| Sbjct 2569558 CCGAACGTTATATTTTTGGGTGGATTACAT 2569587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396259689963018