Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3650 187 2e-42 seq593 132 4e-26 seq803 93.3 3e-14 seq1964 82.4 6e-11 >seq3650 Length=1334389 Score = 187 bits (206), Expect = 2e-42 Identities = 492/747 (66%), Gaps = 7/747 (1%) Strand=Plus/Minus Query 27710 GCTTACTTTGTCGAGTGGGGTGTGTATGGTAGACAGTATCCGGCCAACAAACTACCCATA 27769 || ||||| || || ||||||||||| ||| | | || | | | | || || Sbjct 961510 GCATACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGATCGTGTTCCAATT 961451 Query 27770 CCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGGCGGAGACGGTATCAAC 27829 || || ||||| ||||| || |||||||| | || |||||||| ||||| || |||||| Sbjct 961450 CCTAACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGAGATGGCATCAAC 961391 Query 27830 GATAGCCTAAAACAGATCCCCAATTC--TTTTGAGGTCCTCCAAAAGTCATGCTCAAACC 27887 || ||| ||||| ||||| || | ||| | | || || | || ||| || Sbjct 961390 GACAGCTTAAAAGAGATCG--AAGGCAGTTTCCAAGCTCTTCAGAGATCGTGCAGCGGCC 961333 Query 27888 GAGCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTGCAAAAACCGCAAAAGG 27947 ||| || || | || || |||||| |||| ||| || || ||||| || |||| Sbjct 961332 GAGAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAAACCACAGAAGG 961273 Query 27948 GTGTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAGTTGATGGCCATCAAAC 28007 | | | |||||||| || ||||| || |||||||||||| ||||| | |||||| Sbjct 961272 GATTGTCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGATGTCTCTCAAAC 961213 Query 28008 GACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGGACTCTGAGCGATCCAT 28067 | | || | || || || || || || ||||| ||||| || |||||| | Sbjct 961212 AAGCCAGGCCTGAACTTAAGATCCTACCTTCCATCGGTGGTTGGACACTAGCCGATCCCT 961153 Query 28068 TCTTTTTTATGCACGACCCGGCCAAGCGTGCCGTGTTTGTAGAGTCTGTGCGCGAATTTC 28127 |||| || | |||| || ||| | | || || || ||||| || || | Sbjct 961152 TCTTCTTCTTCACCGACAAGGAGAAGAGAGATCGCTTCGTTGATTCTGTAAAAGATTTCC 961093 Query 28128 TGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAGTTTCCGGGTGGAAAGG 28187 | || ||||||||||| || || || || | || ||||| || || || || |||| Sbjct 961092 TCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGAGGTAAGG 961033 Query 28188 GAGCCAACCCCGCGATCGGTAACCCCGACATTGACGCAAAAACGTACACCGCGCTGTTGC 28247 |||| ||||||| ||||| | ||||| | |||| | | ||| | | || Sbjct 961032 GAGCTAACCCCGACCTCGGT-AGCCCGAAA--GACGGAGATGTTTACGTTGAATTAATGA 960976 Query 28248 GCGAACTAAGATTTATGCTGGACGAGTTGGCGGaaaaaaaCGATCGCGTCTACCAACTAA 28307 ||| | | ||| || |||| | | ||| | | || | ||| | || | Sbjct 960975 AGGAATTGCGTGAAATGTTGAACGACCTTTCTGAAGAGACCGGTAAGAAATACGAGCTGA 960916 Query 28308 CCACCGCTATTAGCGCCGGGCATGATAAAATACAAGTGGTCAACTACGCTTCGGCCCAAA 28367 || ||||||| || || || ||||| || ||||| ||| | ||| | || |||| Sbjct 960915 CCTCCGCTATCAGTGCTGGATGGGATAAGATCCAAGTTGTCGATTACAGTGAAGCTCAAA 960856 Query 28368 AACATCTGGACCACATTTTCGTTATGAGTTACGATTTTAGGGGCGCCTGGTCCAACACCG 28427 | || ||||||| || ||| |||||||||| ||||||| ||||||||||| ||| | Sbjct 960855 AGTATATGGACCATATCTTCCTTATGAGTTATGATTTTAAAGGCGCCTGGTCTAACGACA 960796 Query 28428 ACGTGGGCCATCAGACACCGCTTTACG 28454 | | || |||||||| || ||||||| Sbjct 960795 CCCTCGGTCATCAGACTCCACTTTACG 960769 >seq593 Length=2014934 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || |||| || | ||||| || ||||| || |||||||||||||| || || Sbjct 755144 GCCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGA 755203 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || || | ||||||||| ||||| || || || || ||||| | ||| Sbjct 755204 AAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGG 755263 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||| || ||||||| | | | ||||| | |||||| Sbjct 755264 AATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCAC 755323 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||| || | ||||| |||||||||||||| Sbjct 755324 CTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || ||| || ||||| || || || || || | | || | || ||| Sbjct 755619 ACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTCC 755678 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||| |||||||| || || || ||||| || || | ||||| |||||||||||| Sbjct 755679 AACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 755738 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || ||| | | | ||||| | ||||||||||| || || || || Sbjct 755739 ATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTG 755798 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771 || ||||| || || ||||||||||||||| ||| Sbjct 755799 CCTGTCAATGTCTTCACAAAAATCTGCATCTTGT 755832 >seq803 Length=5213733 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 9073 AAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGAC-AAAGTCTGT 9131 |||||||||||||| |||||||| ||||| || || || || || || | ||| |||| Sbjct 849280 AAGATTTGTTCACAGATTAATTGCGCAATTCTATCACCTTTCTTGACATCAAAATTCTG- 849338 Query 9132 GTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACC 9191 || ||||||||||| || || ||||| || || || | ||||| ||||| |||||||| Sbjct 849339 ATCTGAATGATTGAAGAGTACTACTCCAACATTGCCACGATAATCTTCATCAATCACACC 849398 Query 9192 AGC 9194 || Sbjct 849399 GGC 849401 >seq1964 Length=1360 Score = 82.4 bits (90), Expect = 6e-11 Identities = 166/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 48523 TGCAGATATAGTCGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTT 48582 || || ||||| || ||||||| | || || | ||||||||| || || ||| || | Sbjct 289 TGAAGTTATAG-CG-CGCCGCCGCGGAGACGAAGCACCAAATGAAGAGTAGACTCCTTCT 232 Query 48583 GAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTC 48642 | || ||||| || || || | ||| | || ||||||||||| |||||||| || || | Sbjct 231 GGATGTTGTAGTCGGAGAGTGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATGAGAC 172 Query 48643 GCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAG 48702 | || || || | || | || |||||||| ||||| || ||| | | | Sbjct 171 GTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGG 112 Query 48703 ACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCT 48762 || || | || || || | || || ||||| || |||| ||| || || || |||| Sbjct 111 TGTCCGAGGGTTCAACTTCTAGGGTGATTGTTTTGCCAGTCAGAGTCTTGACGAAGATCT 52 Query 48763 GCAT 48766 |||| Sbjct 51 GCAT 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380919614269302