Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3650 174 1e-38 seq2316 91.5 1e-13 >seq3650 Length=1334389 Score = 174 bits (192), Expect = 1e-38 Identities = 475/718 (66%), Gaps = 11/718 (2%) Strand=Plus/Plus Query 106278 GTTCGACCACGCCCCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTG 106337 ||| ||||| || ||||||||||| |||||||| ||||| || | ||||| ||| ||||| Sbjct 960800 GTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCATATACTTTTG 960859 Query 106338 TGCGTCGTTATAGTTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAA 106397 || || | || | || || || || || | || || || |||||| ||| | Sbjct 960860 AGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCGGAGGTCAG 960919 Query 106398 TTCGTAGAATTTGCCCGTTTG--CAGTTCTAATTCGTCTAGCATGGCGCGCAACTCTTGC 106455 ||||| || || || | ||| | |||| | ||| | ||||| || | | Sbjct 960920 CTCGTATTTCTTACCGGTCTCTTCAGAA--AGGTCGTTCAACATTTCACGCAATTCCTTC 960977 Query 106456 AACAGCACGACATATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGCCCCT 106515 | | | || || || |||| ||| | | || | || || || || Sbjct 960978 ATTAATTCAACGTAAACATCTCCGTCT--TTCGGGCTA-CCGAGGTCGGGGTTAGCTCCC 961034 Query 106516 TTGCCGCCTGGAAATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAA 106575 || || || || ||||||||||| || || || ||||| || || ||||| | Sbjct 961035 TTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTCAAGAGG 961094 Query 106576 AATTCCTTTACAGAATTTACAAACACGTTTCTTTTTTCAACGTCA-TGCATAAAATAGAA 106634 || || |||||||||| || || | ||| || || ||| || | || | |||| Sbjct 961095 AAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTGTCGGTGAAGAAGA-AGAA 961153 Query 106635 GGGGTCTGATAGCGTCCAACCGCCTATAGACGGAAGCACTTTTAAATGC-GGATTTGCCA 106693 ||| || | ||| |||||||| || || || || || | | |||| | | || | || Sbjct 961154 GGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGA-TCTTAAGTTCAGGCCTGGCTT 961212 Query 106694 ATTTAGCCGCCATCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGC 106753 ||| | ||||| ||| |||||||| || |||||||| |||||||| | |||| | Sbjct 961213 GTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAAGACAATC 961272 Query 106754 CTTTTTGCGGCTTCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGC 106813 | || || || ||||| | || ||||| |||||||||||||| ||||| ||||| | | Sbjct 961273 CCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTTGAAATCTTCTC 961332 Query 106814 GCCCTTTGCATGATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGT 106873 | || |||| ||| | || | || || ||||| || || ||||||| |||| Sbjct 961333 GGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCGT 961392 Query 106874 TTATTCCATCACCGCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCA 106933 | || ||||| || ||||| || ||||| || ||||| | |||||| | | || || | Sbjct 961393 TGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGTCAGGTTAGGAA 961452 Query 106934 GCGGGACTTTATCTACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGC 106991 || || ||| || || || || | ||||| |||||||| || || || || Sbjct 961453 TTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTACGAAGTATGC 961510 >seq2316 Length=6356476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 || |||||| || || |||||||| | |||||||||||||| || || ||| | Sbjct 2659341 AACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGC 2659400 Query 28610 TTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 || || || | | || | || || |||| || ||||||||||| | ||| || Sbjct 2659401 CTCTGACACTATTGAAAATGTAAAAGCGAAAATTCAA-GACAAAGAGGGCATTCCCCCAG 2659459 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 |||| || || | ||||| || |||||||| || |||||| || || |||| | Sbjct 2659460 ATCAGCAAAGGTTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCCGACT 2659519 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | ||||| || || ||||| || || ||| |||| || || | |||||||| Sbjct 2659520 ACAACATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTGCGAGGAGG 2659571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425384714778246