Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2316 214 9e-51 >seq2316 Length=6356476 Score = 214 bits (236), Expect = 9e-51 Identities = 336/479 (70%), Gaps = 4/479 (1%) Strand=Plus/Plus Query 25914 CATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTC 25973 ||| || ||||| || |||||| |||||||| ||||| | ||||||||||| |||| Sbjct 2966422 CATCTTTTTCAACACGCTTCATAAACAAATCTGGGATCCATAATGCATAAAATAGTTCTC 2966481 Query 25974 TCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTG 26033 | ||||| | ||||||||| || ||||||||| |||||||| || ||||| | ||| | Sbjct 2966482 TGGCTCTGACTTCTTCTTTGCCAGTATTCTTTTTCAGATCTAAAAACTCAAACACATCAG 2966541 Query 26034 AGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTA 26093 ||||||| |||||||| || |||||||| |||| || ||| || ||||| || | Sbjct 2966542 AGTGCCAGGGTTCTAAGTAAATAGCAAATGCACCTGGTCGTTTGTTGCCTCCTTGGTCAA 2966601 Query 26094 CGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGT 26153 | || ||||| || | |||| | ||| ||||||||| || | ||| | || | |||| Sbjct 2966602 CATACCTTGCTGTATTATTGTACACTCGCAACATTGGTACAAGACCATTGGATACACCGT 2966661 Query 26154 TTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCAC 26213 | || | || | | ||| | | ||||||| ||| |||| | || || |||| Sbjct 2966662 TAGTACCTGCTATATAAGTACCTTTTGCTCTAATACAATGAACATGTAGTCCAATGCCAC 2966721 Query 26214 CAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTAT 26273 |||| ||||||| || |||||| | | | ||| || | || |||| ||||| | Sbjct 2966722 CAGCTGATTTTGAGATTAATGCACATTGTTTTAGTGTGTCATATATACCTTCAATGCTGT 2966781 Query 26274 CACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAA 26333 || ||||||| ||| | || |||||||| ||||| | | ||| ||| | | Sbjct 2966782 CATCTTTCATAGCTATGAGGAAGCAAGAAGACAATTGTGGTCTCGGAGTTGCTGCAGAGA 2966841 Query 26334 ATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCA--AAGCTGTATAAGTTTCAA 26390 ||||||| || | ||||| ||| | ||| |||| || ||| || || ||||||| Sbjct 2966842 ATAATGTGGGACTGGCATGTGTAAAGTATTTTTCAGACAATAAGTTG--TAGGTTTCAA 2966898 Score = 132 bits (146), Expect = 2e-26 Identities = 319/473 (67%), Gaps = 16/473 (3%) Strand=Plus/Plus Query 24703 ATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTT 24762 |||||||||||| |||||||| | | ||||| ||||||| || |||||||| | ||| Sbjct 2965244 ATAATACATTCCTGTTTTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTT 2965303 Query 24763 TGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTG 24822 | || || | | | | | | ||| | |||||| |||| | ||| Sbjct 2965304 TCCATAATTCGGTTCAGCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACC 2965363 Query 24823 TCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCT 24882 || ||| ||||| | | ||| | ||||| | || || || || ||||||| || Sbjct 2965364 TCGATCAGCAGCCATTTTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAA 2965423 Query 24883 CTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATTTTCTCTCAAT-- 24940 ||| | || || |||| |||| | |||||||||| || ||||| | | | ||| Sbjct 2965424 TTCTCTAATGTCCTTTGGTATACGCTCGATATTTTGAATGGAACCATTGT-TGTGAATTA 2965482 Query 24941 --AGATTCAATCTCATATTCGGTGTCCAA-AGAT-TAATTTTTTCAAGATCTCTAATCAA 24996 ||||| | |||| | || |||| | | || | | ||||| |||| | ||| Sbjct 2965483 TCAGATT---TTTCATGT-CGTCGTCCCATAAATCTGCCTGCGTCAAG-TCTCGCAACAA 2965537 Query 24997 GTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA--GTTTGAA 25054 || | || | | ||||| ||||||||||| | ||| ||| ||| |||||| Sbjct 2965538 ATGATGGTTAACAACCTGGAATTCCCCAGACAAAACACGTCT--TTGGTAAATGTTTGAT 2965595 Query 25055 GTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATT 25114 || ||||||||||| ||||||| ||||| |||||||| | ||||| ||||| |||||| Sbjct 2965596 GTAAATGGTTCAAAGGATTCATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATT 2965655 Query 25115 AATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 |||| ||| |||||||| | || |||| ||| |||| | || |||||| Sbjct 2965656 GGAGCTAATAAAAGCGAATTGCGCAGCCCATGTTTGGCAATTTTTTCTTTTAA 2965708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253028052874550