Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq593 131 3e-25 seq348 118 2e-21 seq2316 111 3e-19 >seq593 Length=2014934 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||||||||| | ||||| || | ||||| ||||| ||| || ||||| Sbjct 755370 ATTCCTCCTCTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCT 755429 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| || | ||||| ||||||||||| |||||||| || || || Sbjct 755430 GACAATGTGCGTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGG 755489 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| || ||||| || | || || | || Sbjct 755490 GGAATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCA 755549 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| || || || || || || || || |||| || |||||||| Sbjct 755550 ACCTCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | ||| || || | || | || || ||| || || ||| Sbjct 754914 ATACCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCA 754973 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | ||||| ||||||||||| |||||||| || || || Sbjct 754974 GAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGG 755033 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || ||| ||||| || | ||| || | ||| Sbjct 755034 GGGATACCTTCTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCA 755093 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||| || || || || || || | || || ||||| Sbjct 755094 ACCTCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCAT 755143 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| | || || |||| || | ||||| ||||||||||| ||||| Sbjct 754733 GATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCT 754792 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || || || ||||| || ||||| || || || ||||| || | Sbjct 754793 CTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGT 754852 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || | ||||||||||| || || || || || || | ||||||| ||| ||||| Sbjct 754853 GTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTTAACAAAGATCTG 754912 Query 192534 CAT 192536 ||| Sbjct 754913 CAT 754915 >seq348 Length=4065129 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| |||||||| || | |||||| || || || || || ||||| || || | ||| | Sbjct 3297633 CCTCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCT 3297574 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | | ||| ||||||||||||||||| | |||||||| || || || ||| |||||||| Sbjct 3297573 TCAACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATG 3297514 Query 49966 CTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATTTATAGCCCAATCTG 50025 | | ||| || ||||||| || | | | ||||| | || ||||| |||| Sbjct 3297513 CAACTATCCTCTCTCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTCTG 3297454 Query 50026 CtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 | |||||||| | | |||||| | | || || || || || || Sbjct 3297453 CCTTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAACAA 3297411 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 50112 AAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTT 50171 || |||||||| ||||| |||||| |||||||| ||||| ||| ||||| ||| Sbjct 3297220 AATGAATACATCTCAGAGTGTACATTCTCCATAGCAATTTGGAATCCGTAAAAGAACCTT 3297161 Query 50172 GCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCA 50231 ||||| | |||||||| | ||||| || || | ||| ||| ||||||||| Sbjct 3297160 GCTTCACCAATTTGAACTTCTTGTGAAAATCGCTCTACCAGATTTTCATTAACAATACCA 3297101 Query 50232 TCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAA 50291 || || || || || || || || || | ||| |||||||| | ||| || |||||| Sbjct 3297100 TCGGAGGCAGCAAAAAACGCCAAGACATGTTTTATAAAATGCCTCTCACAGTCCTTTAAA 3297041 Query 50292 TTTTCCCAA 50300 |||||||| Sbjct 3297040 CTTTCCCAA 3297032 >seq2316 Length=6356476 Score = 111 bits (122), Expect = 3e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || || || ||||| ||| |||| || || ||||| || || ||||| || || Sbjct 2659527 GATGTTGTAGTCGGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCT 2659468 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || ||||| || || || || ||||| ||||| ||||| ||||||||| |||| Sbjct 2659467 TTGCTGATCTGGGGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGT 2659408 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || | ||| || |||| || ||||||||||| || | ||||| | || ||||| Sbjct 2659407 GTCAGAGGCTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTG 2659348 Query 192534 CATT 192537 |||| Sbjct 2659347 CATT 2659344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984431134719900