Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq348 114 2e-20 seq2316 96.9 6e-15 seq593 87.8 3e-12 >seq348 Length=4065129 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 39150 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 39209 || |||||||| || | |||||| || || || || || ||||| || || | ||| || Sbjct 3297631 TCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCTTC 3297572 Query 39210 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCT 39269 | ||| ||||||||||||||||| | |||||||| || || || ||| ||||||||| Sbjct 3297571 AACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATGCA 3297512 Query 39270 ATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCt 39329 | ||| || ||||||| || | | | ||||| | || ||||| ||||| Sbjct 3297511 ACTATCCTCTCTCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTCTGCC 3297452 Query 39330 ttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 |||||||| | | |||||| | | || || || || || || Sbjct 3297451 TTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAACAA 3297411 Score = 105 bits (116), Expect = 1e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476 |||||||| ||||| |||||| |||||||| ||||| ||| ||||| ||||||| Sbjct 3297217 GAATACATCTCAGAGTGTACATTCTCCATAGCAATTTGGAATCCGTAAAAGAACCTTGCT 3297158 Query 39477 TCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 39536 || | |||||||| | ||||| || || | ||| ||| ||||||||||| Sbjct 3297157 TCACCAATTTGAACTTCTTGTGAAAATCGCTCTACCAGATTTTCATTAACAATACCATCG 3297098 Query 39537 GATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 39596 || || || || || || || |||| ||| |||||||| | ||| || |||||| || Sbjct 3297097 GAGGCAGCAAAAAACGCCAAGACATGTTTTATAAAATGCCTCTCACAGTCCTTTAAACTT 3297038 Query 39597 TCCCAA 39602 |||||| Sbjct 3297037 TCCCAA 3297032 >seq2316 Length=6356476 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || || || | ||| | || || || ||||| || || || || || || Sbjct 2659526 ATGTTGTAGTCGGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTT 2659467 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || || || ||||| ||||| ||||| ||||||||| ||||| Sbjct 2659466 TGCTGATCTGGGGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTG 2659407 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| || |||| || ||||||||||| || | ||||| | ||| |||||| Sbjct 2659406 TCAGAGGCTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGC 2659347 Query 172068 ATT 172070 ||| Sbjct 2659346 ATT 2659344 >seq593 Length=2014934 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| |||||||| || |||||||| ||||| || || || ||||| || ||||| || Sbjct 754770 TGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATC 754829 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| || || || || | ||||||||||| || || || || || Sbjct 754830 TTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCT 754889 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||||| || |||||||| Sbjct 754890 GTCAGGGTTTTAACAAAGATCTGCAT 754915 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| |||||||| || |||||||| ||||| || || || ||||||||||| || || Sbjct 754998 TGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCTTTATCCTGGATC 755057 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| || ||||| || | ||| || || | || ||||| || || Sbjct 755058 TTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACCTCCAAGGTGATGGTCTTGCCT 755117 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || || || || | ||| || ||||| Sbjct 755118 GTCAAAGTCTTCACGAAAATTTGCAT 755143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905092168789200