Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2316 174 5e-38 seq447 100 8e-16 >seq2316 Length=6356476 Score = 174 bits (192), Expect = 5e-38 Identities = 634/973 (65%), Gaps = 22/973 (2%) Strand=Plus/Plus Query 155399 AAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCT 155458 |||||| || ||||| || || |||||||| || | ||| | || | ||| | Sbjct 2965922 AAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGCATGTTGGAATT 2965981 Query 155459 GCTTGTCTTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCA 155517 ||| ||||| | |||||||||||| ||||||||||| ||||| | ||| | Sbjct 2965982 CTTTG-CTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTTTTGTGTGA 2966040 Query 155518 ATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACA 155577 || ||| || || ||| || || | ||| |||||||||| ||||| |||||| Sbjct 2966041 TTATCTTTGTGACTTCTCTCAACTTTGTAAAGTTGTATGTTTTATCTTCATTAACAAACC 2966100 Query 155578 TACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCT 155636 | | | ||||||| || | |||||| || ||| || | || | | ||||||| Sbjct 2966101 TGTTCAAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGAAG-TGTATTCA 2966159 Query 155637 ACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTA 155696 ||||| || ||||| ||| | || |||||||| | ||| || || || ||| Sbjct 2966160 ACAATTTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGATTGCTTTTT 2966219 Query 155697 CTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGA 155756 |||||||||| ||| || |||| || ||||| || ||||| |||| ||||| || | Sbjct 2966220 CTGTTACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTGTGCTTCTATG 2966279 Query 155757 AT--CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCAT 155814 || |||| ||| || || | || | |||||| |||| |||| |||| Sbjct 2966280 ATTGCTTT--CCACAGTTCTTGAGCTCGGACTTGCTTAACAAATCTCTTTTCCTCTTCAT 2966337 Query 155815 ATT--TCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTT 155872 ||| |||||| || ||| | || || || |||| || || || ||||| | Sbjct 2966338 ATTGCCCATATAATGC-TTC-AAATTCTTCTCCCCAACAGTCGGCAAGACCGGGGCAATC 2966395 Query 155873 ATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATACATCA 155930 || ||||| | | ||| |||| || | || ||||||| |||||| | ||| Sbjct 2966396 ATGAGGGCACATTAAACTCCACATTTCAT--CTTTTTCAACACGCTTCATAAACAAATCT 2966453 Query 155931 CTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATCGCCGTGATTCTT 155989 ||| | ||||| || || || | || || |||| || || | ||| |||||| Sbjct 2966454 GGGATCCATAATGCATAAAATAGTTCTC-TGGCTCTGACTTCTTCTTTGCCAGTATTCTT 2966512 Query 155990 CCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACT 156049 || ||||| || || | ||||| || || || | || |||||||| Sbjct 2966513 TTTCAGATCTAAAAACTCAAACACATCAGAGTGCCAGGGTTCTAAGTAAATAGCAAATGC 2966572 Query 156050 ACC-ATTC--CTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAG 156106 ||| || | ||||| || || || ||||||| || || |||||| | || | | Sbjct 2966573 ACCTGGTCGTTTGTTGCCTCCTTGGTCAACATACCTTGCTGTATTATTGTACACTCGCAA 2966632 Query 156107 CATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCG 156166 ||| || | || ||||||||| || || || || |||| | ||| || | Sbjct 2966633 CATTGGTACAAGACCATTGGATACACCGTTAGTACCTGCTATATAAGTACCTTTTGCTCT 2966692 Query 156167 AACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTT 156226 || | ||||| |||||||||||| ||||| | |||| || ||| || |||| || Sbjct 2966693 AATACAATGAACATGTAGTCCAATGCCACCAGCTGATTTTGAGATTAATGCACATTGTTT 2966752 Query 156227 TACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACT 156286 || || | | ||||||||||| ||||||| ||| | || || |||| ||| Sbjct 2966753 TAGTGTGTCATATATACCTTCAATGCTGTCATCTTTCATAGCTATGAGGAAGCAAGAAGA 2966812 Query 156287 TAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTT 156346 ||||| |||| || ||| | || ||||| ||| || | ||||| |||| || || Sbjct 2966813 CAATTGTGGTCTCGGAGTTGCTGCAGAGAATAATGTGGGACTGGCATGTGTAAAGTATTT 2966872 Query 156347 ATTAGACATATAA 156359 | ||||| |||| Sbjct 2966873 TTCAGACA-ATAA 2966884 >seq447 Length=7652121 Score = 100 bits (110), Expect = 8e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || |||||||| |||||||| |||||| || ||||||||||||||| Sbjct 2013086 TCCATAGCCTTTATCAAACGACGTTGAATATATCCAGTTTCAGCAGTTTTTACAGCTGTA 2013027 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAA 302669 ||||| ||||| | |||||||||||||| || || Sbjct 2013026 TCAATAAGACCTTCTCGACCACCCATAGCGTGAAA 2012992 Score = 87.8 bits (96), Expect = 5e-12 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 301814 GAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAA 301873 || || ||||||| || || |||||| |||||||||| ||||| | |||||||||| Sbjct 2013861 GATTTCCTTCAAT-CGCGGTACACCAAGGGTTACGTTT---TTGGATGATACACCAGCAA 2013806 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCA 301933 |||||||||| ||||| || | ||||| | || ||||||| ||||| || | Sbjct 2013805 AGTGGAAAGTGTTCAGTGTCATCTGAGTGGCAGGTTCACCAAGTGACTGTGCAGCTAAAG 2013746 Query 301934 TACCAACCATTTCTCCTGG 301952 || |||||||||||||| Sbjct 2013745 CTCCGACCATTTCTCCTGG 2013727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471744545413538