Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3650 253 2e-62 seq3450 86.0 5e-12 >seq3650 Length=1334389 Score = 253 bits (280), Expect = 2e-62 Identities = 610/909 (67%), Gaps = 27/909 (3%) Strand=Plus/Minus Query 28869 CCCAACCTCTCGCATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAAC 28928 || ||||| | ||| | ||||||||||| | || |||||||| || || || ||||| Sbjct 961450 CCTAACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGAGATGGCATCAAC 961391 Query 28929 GACGCCCTTAAAACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCCGT 28988 ||| | | ||| || || ||||| |||| || || | ||||||| |||||| Sbjct 961390 GACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCTCTTCAGAGATCGTGCAGCGGCCGA 961331 Query 28989 TCAGATTTTAAAGTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGGGC 29048 |||||| ||||| |||||||||||||||||||||| | || ||||| || ||||| Sbjct 961330 GAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAAACCACAGAAGGGA 961271 Query 29049 GTGTCTGCGTGGAACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATGGCTGCCAAGTTG 29108 ||||| | |||||||| || ||||||||||| || || ||||| ||| || ||| Sbjct 961270 TTGTCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGATGTCTCTCAAACAA 961211 Query 29109 GCCAATCCACACATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCGA-CCCTTT 29167 |||| || | | || || ||||| ||||| || || |||||| | |||| ||||| Sbjct 961210 GCCAGGCCTGAACTTAAGATCCTACCTTCCATCGGTGGTTGGACACTAGCCGATCCCTTC 961151 Query 29168 TTATTTTATGCACGACGCGGAGAA-ACGGCGCGTGTTTGTGGACTCGGTCGAGGAATTTT 29226 || || | | |||| |||||| | | || || || || || || | || || Sbjct 961150 TTCTTCT-TCACCGACAAGGAGAAGAGAGATCG-CTTCGTTGATTCTGTAAAAGATTTCC 961093 Query 29227 TGCAGGTGTGGAAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGGGCGGTAAAG 29286 | | ||||| || || || || || ||||| || |||||||| || || ||||| | Sbjct 961092 TCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGAGGTAAGG 961033 Query 29287 GCGCTAA-CCCGACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATT---TTA 29342 | ||||| |||||| || || | | | | |||| || | || | || || ||| Sbjct 961032 GAGCTAACCCCGAC-CTCGGTAGCCCGAA---AGACG--GAGATGT-TTACGTTGAATTA 960980 Query 29343 CTGAAGGAATTGCGCGCAATGCTGGATAAACTGCAATTGCAAACGGGTAAAACGTATGAA 29402 ||||||||||||| | |||| || | | || | || ||||| | || || Sbjct 960979 ATGAAGGAATTGCGTGAAATGTTGAACGACCTTTCTGAAGAGACCGGTAAGAAATACGAG 960920 Query 29403 TTGACAAGCGCAATCAGCTCTGGCCACGACAAAATTGCTGTAGTGAAATACGACGTTGTG 29462 |||| ||| ||||| |||| || || || || || | ||| | | Sbjct 960919 CTGACCTCCGCTATCAGTGCTGGATGGGATAAGATCCAAGTTGTCGATTACAGTGAAGCT 960860 Query 29463 CAAAAATTTCTTGATAAAATATTTCTAATGAGTTACGATTTTAAAGGCGCATGGTCAAAC 29522 ||||| | | | || | || || || |||||||| |||||||||||||| ||||| ||| Sbjct 960859 CAAAAGTATATGGACCATATCTTCCTTATGAGTTATGATTTTAAAGGCGCCTGGTCTAAC 960800 Query 29523 ACCGATTTGGGATATCAAACTACACTCTACGCACCGAGTTGGAATCCCAACGAGCTTTAC 29582 | | || |||| ||| |||| |||||||| |||||| || || || ||| Sbjct 960799 GACACCCTCGGTCATCAGACTCCACTTTACGCACCCGCTTGGAACCCTAAGGAAACTTAT 960740 Query 29583 AACACTGACCACGCCGT---AAAGTCGCTCACTAACCAAGGCGTGGACCCGCGCAAAATT 29639 | ||||||| | || | | | ||| || ||||||||| |||| || ||| Sbjct 960739 ACCACTGACTTTGGTGTGAAATATTTGCTTGCT---CAAGGCGTGAACCCTAAGAAGATT 960683 Query 29640 ATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACGGGCGTGACCGGTTACGTCGGTGAC 29699 | |||||||| || |||||||| ||||| ||||| || || ||| || ||| Sbjct 960682 GTGGTGGGCGTAGCTATGTACGGACGCGGCTGGACTGGTGTTCATAATTA---CGAAGAC 960626 Query 29700 AACTAT---TTTAAAGGCACAGCTGCCGGGCCCGTGACCGGCACTTGGGATGACGGAGTT 29756 ||| || || | |||| || | || || || | || |||||| | ||||| || Sbjct 960625 AACAATCCATTCACTGGCAACGCGACTGGACCAGTCAAAGGTACTTGGCAAGACGGTGTA 960566 Query 29757 GTCGACTAT 29765 || |||||| Sbjct 960565 GTTGACTAT 960557 >seq3450 Length=502752 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 107177 CACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGAA 107236 || || ||||| ||||| || ||||| |||| || |||||||| ||||||||||| | | Sbjct 192491 CATGGTTTCCATGTGCATGAGTTTGGTGACAACACAAACGGCTGCACGTCCGCCGGCGCA 192432 Query 107237 CACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGGC 107296 |||||||| || | || | ||||| |||||| |||| | | || |||||| Sbjct 192431 CACTTCAACCCAGGGAAGCAGGAGCACGGCGCGCCCACCGCCACCGTGCGCCATGTCGGC 192372 Query 107297 GATCTGGGCAACGTC 107311 ||||| |||||| || Sbjct 192371 GATCTCGGCAACATC 192357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412822107941882