Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3650 147 1e-30 seq2316 129 4e-25 seq593 96.9 2e-15 seq1964 87.8 1e-12 >seq3650 Length=1334389 Score = 147 bits (162), Expect = 1e-30 Identities = 332/497 (67%), Gaps = 4/497 (1%) Strand=Plus/Plus Query 6034 TTGGCACCCTTTCCACCCGGAAACTCCCAGTCGATGTCCACTCCGTCAAAGAACTTCCAG 6093 || || ||||| || || || || ||||| |||||||| || || || |||||||||||| Sbjct 961026 TTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAG 961085 Query 6094 GTCTCCAGAAACTCGCGGACGCTTGTGACGAACACCTCACGCTTAGAGTCATCGTTCATG 6153 ||| || || || || ||||| || | ||| | ||| | | | Sbjct 961086 GTCAAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTGTCGGTGAAG 961145 Query 6154 AAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACCGTCAACGAGGGG 6213 || | || |||||| | ||||| || || ||||| ||||||| | | | || Sbjct 961146 AAGAAGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTTCAGGC 961205 Query 6214 TTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTACTCTTCGTTGTACGCC 6273 || |||||| | |||||||||||||||||| || ||||| |||||| | | Sbjct 961206 CTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAA 961265 Query 6274 TCAACACCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTTACCTTGAAG 6333 | || ||||||||||| || | |||||||| ||||||||| ||| ||||| Sbjct 961266 GACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTTGAAA 961325 Query 6334 TCATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAAG--GAATTGGGAATCTGCTTGA 6391 || || || || ||| ||| |||| || || | || | || | |||| || | Sbjct 961326 TCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCG--ATCTCTTTTA 961383 Query 6392 GGGCGTCGTTTATGCCGCTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCA 6451 | |||||| ||||| ||||| |||||||||||||| ||||| || | || |||| Sbjct 961384 AGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGTCA 961443 Query 6452 GATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGA 6511 | ||||| ||||| || || | || || | ||| ||||| ||||| || |||| Sbjct 961444 GGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTACGA 961503 Query 6512 AATACGCACCGACGACT 6528 | || || || || ||| Sbjct 961504 AGTATGCTCCAACAACT 961520 >seq2316 Length=6356476 Score = 129 bits (142), Expect = 4e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 34744 ATCATTTCCTCCCCTCAACCTCAGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTAT 34802 |||||| ||||| | || ||||| |||| ||||| || || | |||||||| ||||| | Sbjct 2659578 ATCATTACCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGAT-TCCTTCTGGATGTTGT 2659520 Query 34803 AGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGT 34862 |||| || | | || |||| || | || || ||||||||||||| | |||||| | Sbjct 2659519 AGTCGGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGAT 2659460 Query 34863 CTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGG 34922 || | || | ||||| ||||| | ||||| ||| || | | || | ||| || Sbjct 2659459 CTGGGGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGG 2659400 Query 34923 CCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || || | |||||||| || ||||||||||| ||||| ||||||||||| Sbjct 2659399 CTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq593 Length=2014934 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| || || | || |||| ||||| || ||||| ||||| || ||||| || Sbjct 755145 CCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAA 755204 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || ||||| || || ||||| || |||||||| ||| | || Sbjct 755205 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 755264 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | ||||| ||| || || || || | || | ||| | Sbjct 755265 ATGCCCTCCTTGTCTTGAATTTTCGCTTTTAC--ATTCTCAATTGTGTCTGATGGCTCCA 755322 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || || |||||||| || || || || ||||| |||||||| Sbjct 755323 CCTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||||||||| || | |||| |||| |||| || || ||||||||| Sbjct 755637 TCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAG 755696 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || || ||||||||| | || | ||||||||||| | || ||| || || || Sbjct 755697 ATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTTGCCTTAAC--AT 755754 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || | ||| || || | ||| |||||||| || || | ||||| | Sbjct 755755 TCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCA 755814 Query 34965 CAAAGATCTGCAT 34977 |||| |||||||| Sbjct 755815 CAAAAATCTGCAT 755827 >seq1964 Length=1360 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || | || |||| |||| ||||| ||||| || Sbjct 239 CTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACCATCCTCCAACTGCTTGCCGGCAAA 180 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||||||| | || | || |||||||| | || || || || | Sbjct 179 GATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAAC--A 122 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || || || || || | ||| || || || || || || ||||| Sbjct 121 TTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTGTTTTGCCAGTCAGAGTCTTG 62 Query 34964 ACAAAGATCTGCAT 34977 || ||||||||||| Sbjct 61 ACGAAGATCTGCAT 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325677422618006